Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0997 ATGATAACGAATCCTCACCCATCTTGCTCGGTGATCGATAAGAATCTGGGGAACAAAATCCGACTTAGGGCAAATACTAACCCTAGTTATCATCCGTTCGCTTTGTCTATTGGCATAGTAGTATTGTCAATCGGGAAGCCGAGTTGCTTTTTGACATTTCCTTGTAATCAACGAAGTCAAATATCTGCAGATATGAGAACTTCATGGGCAGATTCCATCGACAACTCAGCCATTGGTTCTTCAAATGCCAATGCCGCGCCTCCTTCTCGGTCAGCATATGTTCCACCACATCTTCGTAATAAGCCACCATCTTCAGAACCCCCTATGACATCACACCCATCTTCGTTACCGGCCAGTGATCGGGTAAATTTTGGTGGGTCAACTGCTGGGTATCGCGGAGGAAGTTCCTTTAATAAGCCTGACTATGGAAGGCAGGACTATGGTTCTAGTGGTCGAATTGGTGGGGGTTGGAACAATGGAAGCGGAGGGTGGGACCGTGGAAGGGAGCGTGAGGTTAACCCATTTGAGAATGATGAAGCTACAGATCATACTTTTAACGAGCAAGAAAACACAGGCATTAACTTCGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGATAATGTGCCTCCACCTGTAAATACTTTTGCAGAAATAGACTTGGGTGAGGCAGTGAATCAAAATATAAGGAGGTGTAAATACGTCAAACCAACTCCAGTTCAAAAGTACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACAGGATCAGGCAAGACGGCTGCCTTCTGTTTTCCGATCATAAGTGGAATCCTGAGGATGCCACATGTTCAAAGACCACGTGTAGCGCGAACTGCTTTCCCTCTAGCTCTTATCCTATCTCCTACCCGGGAGCTTTCCTGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTAGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTTTCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAGACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTGGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAATATGTCCTGGAATCTGACAAAAGAAGCCACCTCATGGACCTTCTTCACGCCCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACATTGGTTGTGCATTAATGGGTTTCCTGCAACTAGCATTCATGGTGACCGATCACAGCAGGAAAGGGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCACGCGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGAGGGCTGGTAAAATGGGTTTAGCAACAGCCTTCTTCAATGACAATAATCTGTCATTGGCTAAGCCATTGGCCGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCTAGAGCTTCCTATGGCGGTGGCAACAGAAATCGGCGTTCAGGGGGAGCCCGTTTCGGTGGCCGTGATTATAGGAGGGATAGCCAACATAATAAAGGAGCTGACTACTACGGTGGAACAAGAGGATACGGTGTTCCCGCCACTTATGGTGGAGGGTATGGTCCTCCAGGGGTTACTAGCGCTTGGGATTAG 2016 0.4623 MITNPHPSCSVIDKNLGNKIRLRANTNPSYHPFALSIGIVVLSIGKPSCFLTFPCNQRSQISADMRTSWADSIDNSAIGSSNANAAPPSRSAYVPPHLRNKPPSSEPPMTSHPSSLPASDRVNFGGSTAGYRGGSSFNKPDYGRQDYGSSGRIGGGWNNGSGGWDRGREREVNPFENDEATDHTFNEQENTGINFDAYDDIPVDTSGDNVPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDYRRDSQHNKGADYYGGTRGYGVPATYGGGYGPPGVTSAWD 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0997 671 MobiDBLite consensus disorder prediction 78 167 - -
Lele07g0997 671 CDD SF2_C_DEAD 442 578 - -
Lele07g0997 671 SMART ultradead3 234 445 IPR014001 -
Lele07g0997 671 FunFam Probable ATP-dependent RNA helicase DDX4 177 432 - -
Lele07g0997 671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 430 IPR014001 -
Lele07g0997 671 Gene3D - 170 431 IPR027417 -
Lele07g0997 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 584 IPR027417 -
Lele07g0997 671 CDD DEADc_DDX3_DDX4 216 436 IPR044763 GO:0003724|GO:0005524
Lele07g0997 671 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 185 608 - -
Lele07g0997 671 MobiDBLite consensus disorder prediction 615 645 - -
Lele07g0997 671 Gene3D - 432 613 IPR027417 -
Lele07g0997 671 MobiDBLite consensus disorder prediction 624 640 - -
Lele07g0997 671 Pfam DEAD/DEAH box helicase 239 419 IPR011545 GO:0003676|GO:0005524
Lele07g0997 671 FunFam ATP-dependent RNA helicase RhlB 433 612 - -
Lele07g0997 671 Pfam Helicase conserved C-terminal domain 455 569 IPR001650 -
Lele07g0997 671 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 215 243 IPR014014 GO:0003724
Lele07g0997 671 SMART helicmild6 488 569 IPR001650 -
Lele07g0997 671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 608 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0997 Lele-ChrLele07 6002315 6010111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0997 199 601 Eukaryotic Initiation Factors Gene Family AT3G19760 31.527 9.01e-61 207