Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0980 ATGGCTCCTGGAGTCGATGCTTGCAAAGAATTTCAATCTCACCTGACAATTTCAGATCATGACATAGCCAAGTGCAAATACAATGCTAAAAGTAGTAGTCCTCTTACAAAGTCTAATGCTGACTTTGGTGGAAAACATGGAAGTAATTCGAAGAATGGTGTTCATGACTTACTTGAGTGCCCTAGTTGCAAGAATGTGATGTATCCTCCAATTTACCAGTGCCCAAATGGCCATACTTTATGTTCAAACTGTAAGACTAGAGTGCATAACCGCTGTCCAACTTGTCACTTTGATCTCGGAAACATAAGATGTTTAGCCCTGGAGAAGGTGGCCGAGTCATTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATCTATTTGCATGCTATACCAAGATTAAGCATGAGCAAAATTGTAGATTTCGTCCATATAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGGTGGGCAACATTCCAACTCTTGTCAGCCATCTCAAGGACGATCACAATGTCGACATGCATGATGGATGTACCTTCAACCATCGATACGTCAAATCAAACCCTCATGAAGTTGAAAATGCAACATGGATGCTAACTGTTTTCAGTTGCTTTGGAAGACATTTCTGCTTGCACTTTGAGGCTTTTCAGATTGGTACAGCTCCCGTTTATATGGCTTTTTTACGATTCATGGGTGGTGATGACGAGGCTAAGAAGTTCAGCTACAGCTTGGAAGTTGGTGCTAATGGCCGCAGGCTGATATGGCAAGGAATTCCTCGGAGCATTCGTGACAGTCGTAGGAAAGTTCGTGACAGTCAAGACGGACTTATTATTCAGAGGAAGCTAGCTCTGTGTTTTTCTGGCGGAGATGGGCAGGAGTTAAAGTTGAGGATTACTGGGCGTATATGGAAAGAAGAGTGA 927 0.4315 MAPGVDACKEFQSHLTISDHDIAKCKYNAKSSSPLTKSNADFGGKHGSNSKNGVHDLLECPSCKNVMYPPIYQCPNGHTLCSNCKTRVHNRCPTCHFDLGNIRCLALEKVAESLELPCRYQSLGCHDLFACYTKIKHEQNCRFRPYNCPYAGSECSVVGNIPTLVSHLKDDHNVDMHDGCTFNHRYVKSNPHEVENATWMLTVFSCFGRHFCLHFEAFQIGTAPVYMAFLRFMGGDDEAKKFSYSLEVGANGRRLIWQGIPRSIRDSRRKVRDSQDGLIIQRKLALCFSGGDGQELKLRITGRIWKEE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0980 308 CDD RING-HC_SIAHs 58 95 - -
Lele07g0980 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 169 301 - -
Lele07g0980 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 172 301 IPR008974 GO:0005515
Lele07g0980 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 148 IPR013083 -
Lele07g0980 308 ProSiteProfiles Zinc finger SIAH-type profile. 113 173 IPR013010 GO:0008270
Lele07g0980 308 SUPERFAMILY RING/U-box 54 100 - -
Lele07g0980 308 SUPERFAMILY TRAF domain-like 113 304 - -
Lele07g0980 308 FunFam E3 ubiquitin-protein ligase SINAT3 110 168 - -
Lele07g0980 308 Pfam Seven in absentia protein family 102 301 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele07g0980 308 Gene3D Classic Zinc Finger 149 171 - -
Lele07g0980 308 ProSiteProfiles Zinc finger RING-type profile. 60 96 IPR001841 -
Lele07g0980 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0980 Lele-ChrLele07 5882936 5885415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0980 1 308 C3H Transcription Factor Family AT2G41980 73.463 2.89e-171 475
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0943 05 5799814 5802298 Lele07g0980 07 5882936 5885415 hybridization
Lele06g0808 06 4960458 4962721 Lele07g0980 07 5882936 5885415 hybridization