Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0975 ATGGGGGAAGAGACATCGGACGCGATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCAGCTGGCTCCATAACCAATGAATCCGTGAGCTTAGAGGATTGGATTGAAGAGCCTAGGTTTAGCGAATCAGTTAGACATAGGACTCGACAGAGGTGGAGGTGGCGGCATCTTCACATTAGTCCTCCTGAACCTCATCGTAGCTTTATCTTTTCGCCTGAAGTCCAACATATCTCAACGGAATTGAATCATTTGCTGGCCAACCCTGGTAATGGAAGTGCGTTGCAGGCTGGGGAAGGAAGCGTGGCAGCTGAAGATAGGACAGAGGTGGCACCAAAAGCATGTGAGATAAACAATGGTGTTACGGAGGATGAAGCATCAGATAAGAAGGATGATGTTGAAAAGGGTAGTGGAAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGTTGGCTACATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACACCAATATATGGTCGTGGAAACAATGTCCGTCTACCAGAGGAAGATCCTACTCTTAAAGTCCCTCTTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTAATCGAAATGCATTTGCATTCCCAGTGGAAGAGTTGATTCGGCGTCTTGGAAGTAGATTCGATCTCTCTCGAGATGTAGGCCAGCCGCATGAGCCTGAAAATGCCAGGGAAGCAGCCGACAGAACCACTACCTTGTTAAATAGATTTTTGACCTCTCGAGCATTACGGAGAGAGCATATTCATGGGGAAATTGCAGATGATGTAGTGGACTTAACTCAAAACAACATTGGTGGTGGCCCTGAGGCAGGGGATAACCGCAGGTTTCAATCCCTTTTACGCCGAAGAACACAGTCACAAAGAACAACACTTTCTTCTCTTTCATCAGCTCTGAGTTCTGCCGAGAGATTTGTTGAGGCATATATCCGTAGCCATTCTATAGGTAGAAACCAAGAGCAGCCTCCACCGGTGGATGATAGAGATTCCTTTTCAAGTGTTGCTGCCGTTATACGCTCAGAGAGTCAAGTAGACACTAATGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCATCTCGGGTTTCTGATGTGGATAGTGGAGATTCTCGGGCTCCCAGGCGAAGACGTTTGAACTGA 1296 0.4622 MGEETSDAMNLDLNLGPDPEPAAGSITNESVSLEDWIEEPRFSESVRHRTRQRWRWRHLHISPPEPHRSFIFSPEVQHISTELNHLLANPGNGSALQAGEGSVAAEDRTEVAPKACEINNGVTEDEASDKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTFKNVTPIYGRGNNVRLPEEDPTLKVPLRPHARRVESLRQTINRNAFAFPVEELIRRLGSRFDLSRDVGQPHEPENAREAADRTTTLLNRFLTSRALRREHIHGEIADDVVDLTQNNIGGGPEAGDNRRFQSLLRRRTQSQRTTLSSLSSALSSAERFVEAYIRSHSIGRNQEQPPPVDDRDSFSSVAAVIRSESQVDTNVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0975 431 SUPERFAMILY RING/U-box 143 200 - -
Lele07g0975 431 SMART ring_2 147 187 IPR001841 -
Lele07g0975 431 MobiDBLite consensus disorder prediction 399 431 - -
Lele07g0975 431 CDD RING-HC_AtRMA_like 145 189 - -
Lele07g0975 431 MobiDBLite consensus disorder prediction 409 431 - -
Lele07g0975 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 318 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele07g0975 431 FunFam E3 ubiquitin-protein ligase RMA3 115 236 - -
Lele07g0975 431 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Lele07g0975 431 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Lele07g0975 431 Pfam Zinc finger, C3HC4 type (RING finger) 147 187 - -
Lele07g0975 431 MobiDBLite consensus disorder prediction 1 26 - -
Lele07g0975 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0975 Lele-ChrLele07 5848566 5849861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0975 1 422 C3H Transcription Factor Family AT3G58030 53.950 5.04e-134 390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0975 07 5848566 5849861 Lele07g0975 07 5848566 5849861 ECH
Lele05g0937 05 5764713 5766005 Lele07g0975 07 5848566 5849861 hybridization
Lele06g0804 06 4932686 4934538 Lele07g0975 07 5848566 5849861 hybridization