Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0962 ATGGATGTTCGTAAGAGAGGGAGGCCCGAGGCTGGCATCAACGTTAACGGTGGCCTCAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAACTGGGGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACGGCTGGCTGCCCTTTTGGAGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAACGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTACACCTGCTGCTTCTAGAAATGTTGCAGCCCCACCACCAGTTCATAATGGCTCCTCTCCTGCTGTCAAAACTCGCATATGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGAGAAGTGTCATTTTGCACATGGTGAATGGGAGCTTGGCAAGCCTATTGCTTCTTCAGTAGAAGATCATCGTGGTATGGGACCTATTGCAGGCCGTATTGCTCCTAATCGAATGGAACCTCCACCTGGTCCTATGGCTAGTTTTGGAGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGCGGTGTAAACTCTAAGCAGATCTGTCGCCAAACAGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAGCATTGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCTAGTAACATGGTTAAAGAGTTGCTTGCAACCATCTCAATGTCTGCGCCACCTAAAATCCCCGGTGTTCCCAGTGCTCCAGCCCCACCTGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGTACCTTCGGAGGAAGATGTCACTTTGCACATGGGGCTTCTGAACTGCGTAAAACAATAATTTCGATTGAATCTGTAGATGTTCTCATTAGGTATGCTGAATTGGCTAGAGTTCATTGTCCCGAGATTTCTAATCAAGACTGGTACTGTGTTATTGTACGGAGTTGCACTGTTTCTTCTACGTTTGACTTGTTTTTCGATTCTGTTCTGTTGGATCGTTGGCTTCATATTAGAATTAGTAATTAG 1062 0.4529 MDVRKRGRPEAGINVNGGLKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTPAASRNVAAPPPVHNGSSPAVKTRICNKYNSAEGCKFGEKCHFAHGEWELGKPIASSVEDHRGMGPIAGRIAPNRMEPPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRSIELEGTFEQIKEASNMVKELLATISMSAPPKIPGVPSAPAPPGSNYKTKLCENFAKGSCTFGGRCHFAHGASELRKTIISIESVDVLIRYAELARVHCPEISNQDWYCVIVRSCTVSSTFDLFFDSVLLDRWLHIRISN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0962 353 CDD KH-I 169 232 - -
Lele07g0962 353 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lele07g0962 353 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Lele07g0962 353 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Lele07g0962 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Lele07g0962 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Lele07g0962 353 SMART kh_6 166 236 IPR004087 GO:0003676
Lele07g0962 353 Gene3D - 259 291 - -
Lele07g0962 353 Gene3D - 92 130 - -
Lele07g0962 353 SUPERFAMILY CCCH zinc finger 258 290 IPR036855 GO:0046872
Lele07g0962 353 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Lele07g0962 353 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Lele07g0962 353 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Lele07g0962 353 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lele07g0962 353 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Lele07g0962 353 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lele07g0962 353 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lele07g0962 353 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Lele07g0962 353 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Lele07g0962 353 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lele07g0962 353 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Lele07g0962 353 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 147 IPR045877 GO:0003729
Lele07g0962 353 Pfam KH domain 170 233 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0962 Lele-ChrLele07 5762274 5767381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0962 35 134 C3H Transcription Factor Family AT1G68200 26.000 4.32e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele07g0962 KH_1 3.8e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1541 13 24590308 24593823 Lele07g0962 07 5762274 5767381 CCT
Lele14g1461 14 22974390 22981412 Lele07g0962 07 5762274 5767381 CCT
Lele15g0884 15 5133857 5136900 Lele07g0962 07 5762274 5767381 CCT
Lele05g0924 05 5686009 5690678 Lele07g0962 07 5762274 5767381 hybridization
Lele06g0784 06 4852944 4861936 Lele07g0962 07 5762274 5767381 hybridization