Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0958 ATGAACGAGAACATGGTTGATTTCTCAGGGCGAGGTCAAGTTCAGCAGAGCCACGGACTAAACGGGGATTCTAATTCTCAGTTTGGTATTGGTTATTGTGAATACATGGATATCAATCAGGCCTGGAATATGGGAAGTTGCAGCCAAACCCTCGCCGTCGCCGCCGGAGGAGGAGTCCAACAACAACAACCACCACCACCAAACCAAGGCGGCCCTGCAAAATCCTCCGCCACGGCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTTTACGCCACTGAACGATGCATGGGGTTTCAGGTTCAGCAATATGATTCCCAGCTTGGTAGTCCCTCTTTGACCTCTCAGTTCTCCAAGCTTAACGACTTGGATTTCCCTCTTTATCAGTCTGACCCCAGTTTCGAATCTTCCAATAACACCCTGCAAGCAATGGTGATGGAATCTCCATTGAGCAGTAACCAATACCGTAGATCCCCTGAAAAATCCAATAAATTTTCTTACGGGAATTTGCCCACCACCACCAAGTTTCTTCCTATTCAACAACACAGCTTGTTTGTTAACGATTCTGCCTCAGTTGGTCTCTGCTCATATAATATACATGTTGATCAGATGAGTTTCACTTCTCAGCAAGAGAATAAGCTGTCTCCATCAGAAGGGAGTGTTTCAATTGTTTCTGGAAACCAGAGTTCCAATGGGACAACAGTTTCAAGCAAAACTCGCATTAGGTGGAACCAGGATCTGCATGAGAAGTTCGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAATGCCACACCAAAAGCTATATTAAAGCTGATGGACTCCGATGGATTAACCATCTTCCATGTGAAGAGTCATTTGCAGAAATACAGAATTGCAAAATTCATGCCAGACTCAGCTCAAGGAAAGACTGATAAAAGATCCAATGTAGAAGATGTGCATCATCTTGACACCAAAACTGGGTTGCAGTTAAGAGAGGCATTTCAGCTGCAGTTAGATGTTCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGAAAGCTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAGCAGCAGAAGACGAGTGATAGCCTCTTGAATACTCAGAATTTGAGCAGCACAGCCAATGATAATAATAGCGATACATCAAATAATCACAAATATTTTGAATTATCAACTTCTGAAGGGTCTGGGAATTCTTTCTTCCATTCCAAGATAAATGGAGAAATTTTGCGTCATTACAGTACACTGCTGCGGTGTTGTTTCCTTCTATTGGAGTACATGGTGGAGCTGAAAACCAACACGGATTCAAAGGAAGATCTTCGCTTTCTCCTTGACCCGCTCGCCAAGCCCCAGCTTGTTGATCTTCTCGCTAAACTATTCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCAGCTCGGAAACCTTGTGTGCTGGCTTTCTAACTCTCAGGGCAGGTTGTCTGTCTGTAATCTAGCTGCTGAGGGCCTAAGCAGAGCAAGTAATGCCCTTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAGATGTTGCTTAAATTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCTGTTGCGTATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTGACATACAAGACGGCAGAAGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGACTCTTGGGCCTCGGATCACGTTAACTGTTGTTATTCATAATGCTTTGAAATGTAATTTGGTAGCACTTCTTGTTTATAACCTCAGCAATCAAAGTTCTTATCATAGCGTTAATTTGCCTCAAGAGTTGTGCTGTATAGACACTGAAGCTGTTGCACATTGCATTCTGTTGTTGCAGGGGAGGAATATAATTGTAAAATATGCGGATTCCCACAAGGGCAAAACAGGGCAGCCATCGGGGGTTCCAATGACAGCCTTACCTATGGCTCCTGTATATTTGCAGATGCAGCATGTCAAAACACATTTTAGCAACCCCCAAGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACCTTCTTATCCAAGTCCTCCCACCGCACCTGCTCCTTATCCTACGCAAGGCCAAATTTCTTATCCTCCAGTTTCTGGCAAGTCAACTGCGCCTGTTGGAATGAACAACTACCCATAG 2235 0.4461 MNENMVDFSGRGQVQQSHGLNGDSNSQFGIGYCEYMDINQAWNMGSCSQTLAVAAGGGVQQQQPPPPNQGGPAKSSATATIMSRFESPASAFYATERCMGFQVQQYDSQLGSPSLTSQFSKLNDLDFPLYQSDPSFESSNNTLQAMVMESPLSSNQYRRSPEKSNKFSYGNLPTTTKFLPIQQHSLFVNDSASVGLCSYNIHVDQMSFTSQQENKLSPSEGSVSIVSGNQSSNGTTVSSKTRIRWNQDLHEKFVECVNRLGGAENATPKAILKLMDSDGLTIFHVKSHLQKYRIAKFMPDSAQGKTDKRSNVEDVHHLDTKTGLQLREAFQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQKTSDSLLNTQNLSSTANDNNSDTSNNHKYFELSTSEGSGNSFFHSKINGEILRHYSTLLRCCFLLLEYMVELKTNTDSKEDLRFLLDPLAKPQLVDLLAKLFCPSKAFCSWLGLEYQLGNLVCWLSNSQGRLSVCNLAAEGLSRASNALDLSLRKLYIGSLSPEVSSEMLLKFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGPRITLTVVIHNALKCNLVALLVYNLSNQSSYHSVNLPQELCCIDTEAVAHCILLLQGRNIIVKYADSHKGKTGQPSGVPMTALPMAPVYLQMQHVKTHFSNPQVGYNYPQTVASYPAPSYPSPPTAPAPYPTQGQISYPPVSGKSTAPVGMNNYP 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0958 744 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 214 396 IPR044848 GO:0003700
Lele07g0958 744 MobiDBLite consensus disorder prediction 219 239 - -
Lele07g0958 744 SUPERFAMILY Homeodomain-like 238 294 IPR009057 -
Lele07g0958 744 MobiDBLite consensus disorder prediction 708 744 - -
Lele07g0958 744 MobiDBLite consensus disorder prediction 57 78 - -
Lele07g0958 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 525 582 IPR000504 GO:0003723
Lele07g0958 744 Gene3D - 519 668 IPR012677 -
Lele07g0958 744 SUPERFAMILY RNA-binding domain, RBD 519 582 IPR035979 GO:0003676
Lele07g0958 744 SMART rrm1_1 524 597 IPR000504 GO:0003723
Lele07g0958 744 FunFam Myb family transcription factor 239 297 - -
Lele07g0958 744 MobiDBLite consensus disorder prediction 724 744 - -
Lele07g0958 744 MobiDBLite consensus disorder prediction 708 723 - -
Lele07g0958 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 656 IPR000504 GO:0003723
Lele07g0958 744 MobiDBLite consensus disorder prediction 1 21 - -
Lele07g0958 744 Pfam MYB-CC type transfactor, LHEQLE motif 325 371 IPR025756 -
Lele07g0958 744 Gene3D - 239 298 - -
Lele07g0958 744 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 240 295 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0958 Lele-ChrLele07 5725496 5732308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0958 230 419 G2-like Transcription Factor Family AT3G04450 44.670 2.09e-47 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele07g0958 RRM_1 7.7e-14 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0920 05 5656114 5658150 Lele07g0958 07 5725496 5732308 hybridization
Lele06g0781 06 4828158 4830241 Lele07g0958 07 5725496 5732308 hybridization