Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0941 ATGGATTCCAATTCCTTTCTCAATTATCAACACCAACGTCAGCCCAATTCTGGGTTGCTTCGCTATCGCTCTGCGCCGACTTCGGTTCTTGCAAATTTCACGCAGTCCCTTGGTTCTGATATCAGTAAGGGCAATAACCCGGGGGAGACTTCTGAATCCGAGAAATTAATCTCTATATTCGTAAATAACGACGACCTGGATTCGTCTAGTTTCCAGGAATTCGAAGCCAAGGCGCCTAAAGCACCGACCGAGGCGGCACTCAACCATATGAACTCCTATAATGGTTTGCCCCCTCACTACCCAAGGCAGAATTCCACAGCGAGTTCTGCCATGGATAGTTCATATGGACTAGTGGAATCACTGGGAATGGATCAAACGCAGCCGAAGAGCTTCACTACGAATTTTCTCAGGCAAAGCAACTCCCCTGCCGGGCTTTTCTCCAACATTTCCTTTCCTAATGGGTATTCCACCGTTAAGGGTGTTGGAAACTATGGTGTGGCGAATGGCAGTAACGGTGAAGGGAGTCCATCCATGAGCAGATTGAAGAATCAGTTTGGCTTCTTATCAAGAAGTAATTCTTCCATAGGAATGTTGTCACAGATATATGAGATAGAGGGTGAGAGCATTGAAGCAACCAACCCTGATAATGGGGGCTTGGGATCTGTGAATGGTCATGGCCCTGGGTTTCCATACAGTTCCTGGAATGATGCGTCCCATCTCTCAGAAAATCTCGCTGGCTTGAAAAGAGAGCCAAGTGACAGTGAAAAATTATTTTCTAATGCTCAGCGCTTGTTCTTGACGCGAATAAGTTGTGATACTCAGAATGGACCGCTAGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAACAGATATGGGTGCCATTGAGAAGTTTCTTCAATTTCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACCCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAGCGGATAAGAAAACTTCAAGAACTAGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCCGTTGAGCACATTAAAGATCTCCAAAAACAATTCAAGACTCTCAGTGAAAAAAGGGCAAACTGCAAATGTATGAGCACGCAGAAGACAGATACAAATCATGTCGTTTGA 1200 0.4517 MDSNSFLNYQHQRQPNSGLLRYRSAPTSVLANFTQSLGSDISKGNNPGETSESEKLISIFVNNDDLDSSSFQEFEAKAPKAPTEAALNHMNSYNGLPPHYPRQNSTASSAMDSSYGLVESLGMDQTQPKSFTTNFLRQSNSPAGLFSNISFPNGYSTVKGVGNYGVANGSNGEGSPSMSRLKNQFGFLSRSNSSIGMLSQIYEIEGESIEATNPDNGGLGSVNGHGPGFPYSSWNDASHLSENLAGLKREPSDSEKLFSNAQRLFLTRISCDTQNGPLGNRVHMLSHHLSLPKPSTDMGAIEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVEHIKDLQKQFKTLSEKRANCKCMSTQKTDTNHVV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0941 399 SMART finulus 327 377 IPR011598 GO:0046983
Lele07g0941 399 Coils Coil 361 388 - -
Lele07g0941 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Lele07g0941 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 388 IPR036638 GO:0046983
Lele07g0941 399 Gene3D - 322 396 IPR036638 GO:0046983
Lele07g0941 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 389 - -
Lele07g0941 399 FunFam Transcription factor bHLH130 family 322 391 - -
Lele07g0941 399 CDD bHLH_AtbHLH_like 326 379 IPR045239 -
Lele07g0941 399 Pfam Helix-loop-helix DNA-binding domain 326 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0941 Lele-ChrLele07 5644295 5646378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0941 1 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.880 1.50e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele07g0941 HLH 4.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0941 07 5644295 5646378 Lele07g0941 07 5644295 5646378 ECH
Lele05g0902 05 5571131 5573213 Lele07g0941 07 5644295 5646378 hybridization
Lele06g0762 06 4706427 4708506 Lele07g0941 07 5644295 5646378 hybridization