Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0931 ATGGCTGACCCTTACTCTCATCTTTTCTCTTCCCCTCCTTTCTTCCAATTCAACCCTTTCCCTTCTTCTAACCCTTCTTCTCACCACCACCACCATCCCTATGCTCTCCACAACTTCTTCAACCACCCCACCGCTTCCTCCTCCTCCGGCGGCTTTTTCCACCACCACCATGCCGCCTCTTATTCTTCTATTCCTTCACCCCCGTCTCCTCCTCTCAGAGAAGCCCTCCCTCTTCTGAGCCTCAGCCCGTCGACGAAGCAAGGGCAAGATCGTCTTCAAGACTTGGCTGTTAAGGTCGACGACGGGATCATCCTTCACAGCGCTAAACCCAAAGAGGAAGAAGAAAATGAAGAGGAGGACGATGAGGCCACCGTCACTGTTGCACTCCACATAGGGCTGCCCAGCCCTAGTGCTGCTGAGATGGCTTCCGTGCTCTCCTCTTGCAACGATAAAGAACAAGGAGGAGCAGGAGATGGCGGCGGGGGTGACGGCGGTGGAGGTGGAGATCATCATGAGGATTATTGTTCTGGGTCTGGGTTCATGCTCCACAATAATCTGAACAAGGGACAGTACTGGATCCCTACTCCATCGCAGATTCTCATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTGAGGCTTCCATGTTATTGTTGCGCACCAGGTTGCAGAAATAACATCGACCACCCAAGAGCGAAGCCACTGAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATAAAGCCGTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGCGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGATCTCTTAAGGATCACATCAAAGCCTTTGGAGTTGGCCATGCTGCTTACGGGATCGATGGGTTTGAAGAAGACGACGACCCTGCGTCCGAAGTTGAGCAAGATAACGAGTCCACCCAGTAA 1104 0.5091 MADPYSHLFSSPPFFQFNPFPSSNPSSHHHHHPYALHNFFNHPTASSSSGGFFHHHHAASYSSIPSPPSPPLREALPLLSLSPSTKQGQDRLQDLAVKVDDGIILHSAKPKEEEENEEEDDEATVTVALHIGLPSPSAAEMASVLSSCNDKEQGGAGDGGGGDGGGGGDHHEDYCSGSGFMLHNNLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEDDDPASEVEQDNESTQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0931 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Lele07g0931 367 SUPERFAMILY beta-beta-alpha zinc fingers 272 310 IPR036236 -
Lele07g0931 367 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Lele07g0931 367 Gene3D Classic Zinc Finger 268 342 - -
Lele07g0931 367 PANTHER ZINC FINGER PROTEIN WIP2 42 364 IPR043584 GO:0003700|GO:0010468
Lele07g0931 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 310 IPR013087 -
Lele07g0931 367 SUPERFAMILY beta-beta-alpha zinc fingers 202 228 IPR036236 -
Lele07g0931 367 FunFam zinc finger protein WIP2-like 205 228 - -
Lele07g0931 367 FunFam Zinc finger protein WIP2 259 341 - -
Lele07g0931 367 SMART c2h2final6 206 228 IPR013087 -
Lele07g0931 367 SMART c2h2final6 290 310 IPR013087 -
Lele07g0931 367 MobiDBLite consensus disorder prediction 141 170 - -
Lele07g0931 367 Gene3D Classic Zinc Finger 205 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0931 Lele-ChrLele07 5569408 5571565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0931 1 367 C2H2 Transcription Factor Family AT3G57670 60.969 1.72e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g0931 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0931 07 5569408 5571565 Lele07g0931 07 5569408 5571565 ECH
Lele05g0893 05 5501649 5503837 Lele07g0931 07 5569408 5571565 hybridization
Lele06g0750 06 4634629 4636786 Lele07g0931 07 5569408 5571565 hybridization