Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0923 ATGGTGTTTGGTTCCTGGGTATTGCGAATGAGAGCAAAGCTGAATCTCCTGCAAATAAGAGCATGTGCTGTGGATTTGAGCGGCCAAAGTTTACACTGTATCCAATCACCGTCTTATATTTTGTTAAGCTCCGCGGAACATAGAAACTGCAAAATGAATCACTTGACTGTTGAGACTGTAGACGCTTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAATGATGTCGAGGGTTTTGAAAGACAGATTGAGCGTGATCCATCCTGTGTTGATGAGGTTGGACTATGGTATGGTCGTGGAACGGGTTCGAAACTAATGGTCAATGCGCAGAGAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATCGGTGTCATGAAGCTGATTCTATCACTATCCAACTCTAACATAAATCGCCCTTTTGGCCTTGACAAGAGCACTGCACTTCATTGTGCTGCATCTGGTGGAGCTGCTAATGCGGTTGATGTTGGAAAACTGCTCTTGTCAGCAGGTGCTGATCCAAGTTCCGTGGATGCCAATGGTCACCGTCCAGTTGATGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATGGCAGGGTTTAATCTTAGGGTTAACACGACCAAATCAAAAGCTGAATCTCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCATCTTCTGCACCAGATGTCCACTTGAAGTCAAAGTCAAATGACGCTCCTGTTTCTCATGCATCAGAGAAGAAAGAGTATCCTGTTGATCCATCTTTTCCAGACATCAAGAACAGCATATATGCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCCGGAGAAAATGCCCGAAGAAGGGACCCAAGGAAGTTCCACTATAGCTGTGTTCCTTGTCCCGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCAGCCCAATATCGAACCCGTCTCTGCAAGGATGGGACAAGTTGCTCTAGAAGAGTTTGTTTCTTTGCCCATACTGCCGAGGAGCTTCGTCCTTTGTATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAAGCACATCTGCCATGGATTTTGCTGCAGCTATGAGCCTGTTGCCTGGCTCCCCTTCCTCTATGTCTGTCATGTCCCCTTCACCATTCACTCCACCTATGTCTCCATCTGCCAATGGCATGTCACACTCTTCAGTTGCTTGGTCACAAGCCAATGTCCCATCTTTGCATTTGCCGGGGAGTAATCTTCATTGCATTCATTTGAGATCCTCGCATAATGCTAGAGATATTCCTGTGGAAGACTTGGATTTGTTGCCAGAATATGAAGCTCAGCAACAGCAGCTCCTTAATGAGTTGTCATGTCTTCCTCAACAACCAACGAATTCTAATAGCATGAATCAGTCACTTCGTATGAAGACATTGGCCCATTCAAACCTTGATGATCTATTTTCTGCCGAGAACTCTTCCCCTCGATTTTCTGATCCAGCAATGGCCTCAATTGTTTACTCCCCAACGCACAAATCTGCTGTTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAAATTTCCTTCCAAGAATGTTGAACATCCTTTAATGCAGCCTTCTTTTGCCGTACAGTCATCAGGAAGGATGTCACCACGCAAAGTGGAACCTATTTCACTGATGAGCCCGAGAATTTCTATGCTAGCTCAACTTGAGAAGCTGCAACAATTCCGTAGCCTTAGCTCTCGGGAACTTGGCTCCAGCTCTGCGGCTGCTGTTGCTGGTTCCTCAATCAATTCTTGGTCCAAATGGGGTTCCCCCAATGGCAAGTTGGATTGGGCTGTCAGTACTGATGAATTGGGTAAATTCCATAGATCGTCTTCATTTGAGCTTGGGAACAATGGCGAGGAGCCTGACTTATCATGGGTGCAGTCTCTAGTCAAAGAATCTCCAGCTGAGATTAAAGAGCCGTCCACTAGTGTCCCAGGCATGGCAGTGGCGGGAACCTCTGGCGAGGGATCAAATATTTGCACCCAAATCGAACCTGTTGATCATGCTGTGTTGGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2253 0.4594 MVFGSWVLRMRAKLNLLQIRACAVDLSGQSLHCIQSPSYILLSSAEHRNCKMNHLTVETVDAFASLLELAANNDVEGFERQIERDPSCVDEVGLWYGRGTGSKLMVNAQRTPLMVAATYGSIGVMKLILSLSNSNINRPFGLDKSTALHCAASGGAANAVDVGKLLLSAGADPSSVDANGHRPVDVIVVPPKLDHVKNSLEELLQTDDSMAGFNLRVNTTKSKAESPPLSTSPENESPSSAPDVHLKSKSNDAPVSHASEKKEYPVDPSFPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWSQANVPSLHLPGSNLHCIHLRSSHNARDIPVEDLDLLPEYEAQQQQLLNELSCLPQQPTNSNSMNQSLRMKTLAHSNLDDLFSAENSSPRFSDPAMASIVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNVEHPLMQPSFAVQSSGRMSPRKVEPISLMSPRISMLAQLEKLQQFRSLSSRELGSSSAAAVAGSSINSWSKWGSPNGKLDWAVSTDELGKFHRSSSFELGNNGEEPDLSWVQSLVKESPAEIKEPSTSVPGMAVAGTSGEGSNICTQIEPVDHAVLGAWLEQMQLDHLVAQQN 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0923 750 ProSiteProfiles Ankyrin repeat profile. 143 178 IPR002110 GO:0005515
Lele07g0923 750 Gene3D - 322 385 - -
Lele07g0923 750 Gene3D - 51 202 IPR036770 -
Lele07g0923 750 Pfam Ankyrin repeats (3 copies) 107 175 IPR002110 GO:0005515
Lele07g0923 750 MobiDBLite consensus disorder prediction 220 246 - -
Lele07g0923 750 FunFam Zinc finger CCCH domain-containing protein 66 280 348 - -
Lele07g0923 750 PANTHER UNKEMPT FAMILY MEMBER 68 695 IPR045234 -
Lele07g0923 750 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 347 IPR000571 GO:0046872
Lele07g0923 750 ProSiteProfiles Zinc finger C3H1-type profile. 327 349 IPR000571 GO:0046872
Lele07g0923 750 SUPERFAMILY Ankyrin repeat 68 188 IPR036770 -
Lele07g0923 750 ProSiteProfiles Ankyrin repeat region circular profile. 143 177 - -
Lele07g0923 750 SMART ANK_2a 143 175 IPR002110 GO:0005515
Lele07g0923 750 SMART ANK_2a 108 138 IPR002110 GO:0005515
Lele07g0923 750 MobiDBLite consensus disorder prediction 220 267 - -
Lele07g0923 750 SMART c3hfinal6 357 380 IPR000571 GO:0046872
Lele07g0923 750 SMART c3hfinal6 322 348 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0923 Lele-ChrLele07 5498700 5501272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0923 62 743 C2H2 Transcription Factor Family AT5G12850 53.438 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele07g0923 Ank_2 1.2e-06 CL0465