Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0920 ATGCGACAAAAATTGGACACCGCAAACGGTTCTGAATCAGATATATGCAGAAACAAACTATATACGACCTGTTCTCAAGCTTGGTGGCATGGCACAGGGCACGATGCCTTCACTAAAGAGATGGCAGGGGAAGTCAAAGTGAATCCTTTTGAGCCACAACATTTGGGTGTTAATTCACAAGCTATGACCTTGCTGGCTGAAGGGAGGGGAGCTACCAAAGAGAAAGGCACTTTCTCCTGTTTCCTTGATTCTCTTCTTATTTATTGTGCTAATATGACTTCTGCTCAGTTACTTGTATTAGGATCAGTTTTAAGTGAGAAAGATGAAGAGCTAACAGCATCACCTGCATTTGGTAGGGAGCCTCTATTAAATAAACCATGGGAAGAGCACCAAAGAGAAGCCACAAAAACTATCTTGTCCCGTAAGAGCTTCCAAGAAAAGGAATTATCCTTGAAAACTAAGCATTATGCACCATCTAAGCAGAGGCATATTGTTTCTTCTTTGTCTCTAGGAATATTGGGAATTCTTAGGCTCCTAAAGACATTGCTTGCATTAGCAGGTGAAGAAAAGTATGAAGAACATCAACAAAAGCAATTTGCAGTCCGTACTTTGCCTTCAACAGCATGTGTATCTTACCCTTATCCAGATCCGCATTATGGGGGAGTAATTCCTCCTTATGGACCTCAACCTTTGGTAGCAATTTGCATTTCATATGAAGCAATGCTTTAAGAACCTGTGTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCCCGTGCCAAGGCTGAGCTTAAAAAGAAGGCGATAAAAGTGAGGAAGCCGTATCTTCATGAGTCTCGGCATTTGCATGCCTTGAGAAGAGCAAGAGGGTGCGGAGGCCGTTTTCTGACAACAAAGAAGGTCGATGGTACTGCTGCAAACACAGCAAACAAGAAACAGGATACTGTTTGTTCAGACCACAAAGGCATATCTCCCAAGTTGTCTGCCATTGCTGATTCAGATTCTGGTTCCCGAGAAGCCTGGAATTCCCACCAATCAGACATACACTCCAGTTCTAATGGCAACAATTATTACTCACACGTTCATGGATTTGAGCTGTCTGGTTATCAAGCTCTCTCAAGTGATAGAGGAAACCAAAGGGATTTCTCTGGGGCTCGCAGGGTCCTGACCATCAAATAA 1191 0.4299 MRQKLDTANGSESDICRNKLYTTCSQAWWHGTGHDAFTKEMAGEVKVNPFEPQHLGVNSQAMTLLAEGRGATKEKGTFSCFLDSLLIYCANMTSAQLLVLGSVLSEKDEELTASPAFGREPLLNKPWEEHQREATKTILSRKSFQEKELSLKTKHYAPSKQRHIVSSLSLGILGILRLLKTLLALAGEEKYEEHQQKQFAVRTLPSTACVSYPYPDPHYGGVIPPYGPQPLVAICISYEAMLXEPVYVNAKQYHGILRRRQSRAKAELKKKAIKVRKPYLHESRHLHALRRARGCGGRFLTTKKVDGTAANTANKKQDTVCSDHKGISPKLSAIADSDSGSREAWNSHQSDIHSSSNGNNYYSHVHGFELSGYQALSSDRGNQRDFSGARRVLTIK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0920 396 ProSiteProfiles NF-YA/HAP2 family profile. 242 302 IPR001289 GO:0003700|GO:0006355
Lele07g0920 396 SMART cbf3 241 302 IPR001289 GO:0003700|GO:0006355
Lele07g0920 396 MobiDBLite consensus disorder prediction 338 358 - -
Lele07g0920 396 ProSitePatterns NF-YA/HAP2 subunit signature. 247 267 IPR018362 GO:0003677|GO:0016602
Lele07g0920 396 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 244 299 IPR001289 GO:0003700|GO:0006355
Lele07g0920 396 PRINTS CCAAT-binding transcription factor subunit B signature 245 267 IPR001289 GO:0003700|GO:0006355
Lele07g0920 396 PRINTS CCAAT-binding transcription factor subunit B signature 276 299 IPR001289 GO:0003700|GO:0006355
Lele07g0920 396 MobiDBLite consensus disorder prediction 339 358 - -
Lele07g0920 396 Gene3D - 242 303 - -
Lele07g0920 396 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 191 360 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0920 Lele-ChrLele07 5469832 5472864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0920 191 364 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.487 2.13e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele07g0920 CBFB_NFYA 4e-25 No_clan