Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele07g0909 | ATGTTACTTCTTGTTTTTGCCGGATTGAGTTTTAATTCAATGGATATTTACCCATTTTCAAATACGAAACTTAATTACGTTTCAGCTGATTTTGATCCTAAAATGGGAACTCCCGAATTCCCAGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAATTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAGGTATTTTGTTTGGAGCACAGAGGTTATATCAAACATCAGTGTCAGAAAGCGGACAAACTGGATGTCGCTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCCGCCCCCGGATGCAGAGAGGTCTTGGTGTTCTCAAACACAATCAAGTGCAGGGATTGCTTGGTAGATCATTGCCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTTTGGAAACAAGCTTTTCATTTATGAATCTCTTAAGCAGAAGTAGAAAGGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCTCATCAAAATGGGCTTCAGGCTTTCGCAATGTGGCGTCAAATATCCGAGCTTCAGCCGAAGCCAGCATGTCAAAATTAGGTAATGAAATTAGCCAAGCGTGGCAAACAGCAAACGATGGGATGGGACAGAGCAGTGGGAGGGGTAATGAAAATGGGCAAGTGGAGATGGAACAATGTCCTCAGTGTAATGCAAAGTTTTCCTCTGTCACTTCTTTGGTGGATCATGTGCAGAAAGTTCATGAAAGGAGCAGCAACGGATCCAGGGGGGTGGCGAAGGTGACCATCGATGCCTGTCCCAAGTGTGGTAGAGGATTTCGAGATCCAGTGGCTCTTGTAGAGCATGTTGAGAGGGATCACGGTGCTGGCAATTTGAACATGGCAGTCAAGTATATCATTCCAGCTGTAATAGCATCATTTGGAGTTGCATGGATCTGTGACACATCGGTTTCTGATGCAAAGATGTTTGGAGGAACTACCACAAAAAGGGTTTCAGATAAGGAGTGGTTCGAGGAGACTGACCAAAAATTTCAGGCATGGCCTCGTACTGCTGGTCCCCCTGTGGTTATGAATCCCATATCTCGCCAAAATTTCATCGTCAAGTCCCGCTCTTACTCTTGA | 1230 | 0.4439 | MLLLVFAGLSFNSMDIYPFSNTKLNYVSADFDPKMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVFCLEHRGYIKHQCQKADKLDVAVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLETSFSFMNLLSRSRKEESKPNPSPPTSSSKWASGFRNVASNIRASAEASMSKLGNEISQAWQTANDGMGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHERSSNGSRGVAKVTIDACPKCGRGFRDPVALVEHVERDHGAGNLNMAVKYIIPAVIASFGVAWICDTSVSDAKMFGGTTTKRVSDKEWFEETDQKFQAWPRTAGPPVVMNPISRQNFIVKSRSYS | 409 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele07g0909 | 409 | SMART | AN1_Zf_4 | 135 | 176 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | SMART | AN1_Zf_4 | 47 | 86 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | MobiDBLite | consensus disorder prediction | 197 | 211 | - | - | |
Lele07g0909 | 409 | ProSiteProfiles | Zinc finger AN1-type profile. | 41 | 89 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 263 | 284 | IPR013087 | - | |
Lele07g0909 | 409 | Pfam | C2H2-type zinc finger | 262 | 284 | - | - | |
Lele07g0909 | 409 | ProSiteProfiles | Zinc finger AN1-type profile. | 129 | 179 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 39 | 289 | - | - | |
Lele07g0909 | 409 | MobiDBLite | consensus disorder prediction | 189 | 211 | - | - | |
Lele07g0909 | 409 | Pfam | AN1-like Zinc finger | 135 | 174 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | Pfam | AN1-like Zinc finger | 47 | 86 | IPR000058 | GO:0008270 | |
Lele07g0909 | 409 | Gene3D | Classic Zinc Finger | 231 | 327 | - | - | |
Lele07g0909 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 302 | 323 | IPR013087 | - | |
Lele07g0909 | 409 | Gene3D | - | 114 | 184 | IPR035896 | - | |
Lele07g0909 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 261 | 289 | IPR013087 | - | |
Lele07g0909 | 409 | SUPERFAMILY | AN1-like Zinc finger | 33 | 93 | IPR035896 | - | |
Lele07g0909 | 409 | SMART | c2h2final6 | 261 | 284 | IPR013087 | - | |
Lele07g0909 | 409 | SMART | c2h2final6 | 300 | 323 | IPR013087 | - | |
Lele07g0909 | 409 | Gene3D | - | 34 | 92 | IPR035896 | - | |
Lele07g0909 | 409 | SUPERFAMILY | AN1-like Zinc finger | 127 | 176 | IPR035896 | - | |
Lele07g0909 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 300 | 323 | IPR013087 | - | |
Lele07g0909 | 409 | Pfam | Protein of unknown function (DUF1138) | 333 | 404 | IPR009515 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele07g0909 | Lele-ChrLele07 | 5396479 | 5406418 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele07g0909 | 35 | 323 | C2H2 Transcription Factor Family | AT2G41835 | 63.823 | 1.11e-122 | 355 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lele07g0909 | DUF1138 | 2.5e-39 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele07g0909 | 07 | 5396479 | 5406418 | Lele07g0909 | 07 | 5396479 | 5406418 | ECH | |
Lele05g0869 | 05 | 5332273 | 5340458 | Lele07g0909 | 07 | 5396479 | 5406418 | hybridization | |
Lele06g0723 | 06 | 4445897 | 4452550 | Lele07g0909 | 07 | 5396479 | 5406418 | hybridization |