Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0909 ATGTTACTTCTTGTTTTTGCCGGATTGAGTTTTAATTCAATGGATATTTACCCATTTTCAAATACGAAACTTAATTACGTTTCAGCTGATTTTGATCCTAAAATGGGAACTCCCGAATTCCCAGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAATTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAGGTATTTTGTTTGGAGCACAGAGGTTATATCAAACATCAGTGTCAGAAAGCGGACAAACTGGATGTCGCTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCCGCCCCCGGATGCAGAGAGGTCTTGGTGTTCTCAAACACAATCAAGTGCAGGGATTGCTTGGTAGATCATTGCCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTTTGGAAACAAGCTTTTCATTTATGAATCTCTTAAGCAGAAGTAGAAAGGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCTCATCAAAATGGGCTTCAGGCTTTCGCAATGTGGCGTCAAATATCCGAGCTTCAGCCGAAGCCAGCATGTCAAAATTAGGTAATGAAATTAGCCAAGCGTGGCAAACAGCAAACGATGGGATGGGACAGAGCAGTGGGAGGGGTAATGAAAATGGGCAAGTGGAGATGGAACAATGTCCTCAGTGTAATGCAAAGTTTTCCTCTGTCACTTCTTTGGTGGATCATGTGCAGAAAGTTCATGAAAGGAGCAGCAACGGATCCAGGGGGGTGGCGAAGGTGACCATCGATGCCTGTCCCAAGTGTGGTAGAGGATTTCGAGATCCAGTGGCTCTTGTAGAGCATGTTGAGAGGGATCACGGTGCTGGCAATTTGAACATGGCAGTCAAGTATATCATTCCAGCTGTAATAGCATCATTTGGAGTTGCATGGATCTGTGACACATCGGTTTCTGATGCAAAGATGTTTGGAGGAACTACCACAAAAAGGGTTTCAGATAAGGAGTGGTTCGAGGAGACTGACCAAAAATTTCAGGCATGGCCTCGTACTGCTGGTCCCCCTGTGGTTATGAATCCCATATCTCGCCAAAATTTCATCGTCAAGTCCCGCTCTTACTCTTGA 1230 0.4439 MLLLVFAGLSFNSMDIYPFSNTKLNYVSADFDPKMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVFCLEHRGYIKHQCQKADKLDVAVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLETSFSFMNLLSRSRKEESKPNPSPPTSSSKWASGFRNVASNIRASAEASMSKLGNEISQAWQTANDGMGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHERSSNGSRGVAKVTIDACPKCGRGFRDPVALVEHVERDHGAGNLNMAVKYIIPAVIASFGVAWICDTSVSDAKMFGGTTTKRVSDKEWFEETDQKFQAWPRTAGPPVVMNPISRQNFIVKSRSYS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0909 409 SMART AN1_Zf_4 135 176 IPR000058 GO:0008270
Lele07g0909 409 SMART AN1_Zf_4 47 86 IPR000058 GO:0008270
Lele07g0909 409 MobiDBLite consensus disorder prediction 197 211 - -
Lele07g0909 409 ProSiteProfiles Zinc finger AN1-type profile. 41 89 IPR000058 GO:0008270
Lele07g0909 409 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Lele07g0909 409 Pfam C2H2-type zinc finger 262 284 - -
Lele07g0909 409 ProSiteProfiles Zinc finger AN1-type profile. 129 179 IPR000058 GO:0008270
Lele07g0909 409 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 39 289 - -
Lele07g0909 409 MobiDBLite consensus disorder prediction 189 211 - -
Lele07g0909 409 Pfam AN1-like Zinc finger 135 174 IPR000058 GO:0008270
Lele07g0909 409 Pfam AN1-like Zinc finger 47 86 IPR000058 GO:0008270
Lele07g0909 409 Gene3D Classic Zinc Finger 231 327 - -
Lele07g0909 409 ProSitePatterns Zinc finger C2H2 type domain signature. 302 323 IPR013087 -
Lele07g0909 409 Gene3D - 114 184 IPR035896 -
Lele07g0909 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 289 IPR013087 -
Lele07g0909 409 SUPERFAMILY AN1-like Zinc finger 33 93 IPR035896 -
Lele07g0909 409 SMART c2h2final6 261 284 IPR013087 -
Lele07g0909 409 SMART c2h2final6 300 323 IPR013087 -
Lele07g0909 409 Gene3D - 34 92 IPR035896 -
Lele07g0909 409 SUPERFAMILY AN1-like Zinc finger 127 176 IPR035896 -
Lele07g0909 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 323 IPR013087 -
Lele07g0909 409 Pfam Protein of unknown function (DUF1138) 333 404 IPR009515 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0909 Lele-ChrLele07 5396479 5406418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0909 35 323 C2H2 Transcription Factor Family AT2G41835 63.823 1.11e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g0909 DUF1138 2.5e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0909 07 5396479 5406418 Lele07g0909 07 5396479 5406418 ECH
Lele05g0869 05 5332273 5340458 Lele07g0909 07 5396479 5406418 hybridization
Lele06g0723 06 4445897 4452550 Lele07g0909 07 5396479 5406418 hybridization