Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0891 ATGGCAAATCCCTCAAGGAAAATAGAATTCCATATTAGGATTCACAATCCACATATGAATAAAAAGGTTCAGAGGTGGCTTGGTTGTCTCAGTGGCGGCGGCGGCCGTAGTAGTTGTCGGAAGCAGGTTTCAGGGAAAATGGGTAGAGGGAAAATTGAAATTAAGAAGATAGAGAATCTGAATAACAGGCAGGTCACCTTCTCCAAGCGACGTAATGGTTTGCTCAAGAAGGCCAAGGAGTTGTCTGTTCTCTGCGATGCAGAGGTCGCCATCATCATTTTCTCCAGCACCGGCAAGCTTTATGAGTTTTCTAACACAAGCATGGAGCACACACTTTCAAGGTACACCAAAGGCGTGGAATTGGATTATACAGAGCAGCCTTGTGATGGACCACCACCTGAGTTCTTAGCTTTTCATTCTAAGCAGGAGACTCAGCCTGATACAGACCTTCTAAAGGATGAAATAAGAAAGCTTCGTTTAGCATACTTAAGAATGGCGGGGAAGGAGCTCGATGGGTTGCAATTTAAAGAGCTGCAGAACTTAGAAAATCAACTGAATGAAGGGATACTATCTGTTAAAGAACAGAAGGAACAAGTACTTCTAGATCAACTTAGGAGGTCCAGATTACAGGAGCAACAAGCCATGCTGGAGAATGAAGCTCTGCTCAAACAAGTTGAGGAGATGCAGAATAAATCAAACACAACACACTTTGTTTATTTCAATACCTTAGAGAGCAAGTTATCCATCAACAATGGTTCCAACCCTATTTTCCATGAAAGAGAAGACCTTTCTGACACTTGCTTGCAGTTAGGGTTGTCAACAAAATTTGGTCGGAAGAGGAAAGCACTGAAAGTAGAACCCTGCAACCACTCAGCCGCCACTCAACTGGCCCCTGCATAG 900 0.4367 MANPSRKIEFHIRIHNPHMNKKVQRWLGCLSGGGGRSSCRKQVSGKMGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAIIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDYTEQPCDGPPPEFLAFHSKQETQPDTDLLKDEIRKLRLAYLRMAGKELDGLQFKELQNLENQLNEGILSVKEQKEQVLLDQLRRSRLQEQQAMLENEALLKQVEEMQNKSNTTHFVYFNTLESKLSINNGSNPIFHEREDLSDTCLQLGLSTKFGRKRKALKVEPCNHSAATQLAPA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0891 299 PRINTS MADS domain signature 69 84 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 PRINTS MADS domain signature 49 69 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 PRINTS MADS domain signature 84 105 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 SMART madsneu2 47 106 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 PANTHER SERUM RESPONSE FACTOR HOMOLOG 47 218 - -
Lele07g0891 299 Coils Coil 211 231 - -
Lele07g0891 299 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 56 103 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 ProSiteProfiles MADS-box domain profile. 47 107 IPR002100 GO:0003677|GO:0046983
Lele07g0891 299 Coils Coil 178 198 - -
Lele07g0891 299 Pfam K-box region 140 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g0891 299 Gene3D - 60 120 IPR036879 GO:0003677|GO:0046983
Lele07g0891 299 SUPERFAMILY SRF-like 48 125 IPR036879 GO:0003677|GO:0046983
Lele07g0891 299 ProSiteProfiles K-box domain profile. 141 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g0891 299 FunFam MADS-box transcription factor MADS-MC 59 127 - -
Lele07g0891 299 CDD MADS_MEF2_like 48 118 IPR033896 GO:0000977|GO:0045944
Lele07g0891 299 ProSitePatterns MADS-box domain signature. 49 103 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0891 Lele-ChrLele07 5271653 5274326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0891 47 226 MADS-box Gene Family AT3G57390 57.459 1.15e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele07g0891 K-box 1.8e-13 No_clan