Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0886 ATGGATCACAAAAGGCAATTCAAGGACTCGCTCTCGTACTCTAGTCTTTTCAATCTCGAGCCTTTGATGAATTTTCAACTTCCACAAGAAGATGATGATTTTGACTATAATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAAATCACATCAATGGGAGTATGCGTGGAAGGGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAACGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATGTTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGAGGACAACTTCTTAAAAGTAACACAGGTTTGAAAGCGCGGAAGTTAGCGAATGAGCATCGAGGAGGAACACATGCTCTGGAGACTACACTCGAGTGGCCTAATGATATTAATCCTCATAAACCTGTAATCTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGATAGAACTATCTATGAACCGGCTTCTTTAGATATTGGAGATGGTGTTACTTACAAAATCCCTCCTCCTTATGATAAGTTAGCCGCAATGCTGAACCTTCCAAGTTTCTCAGATATTCGAGTTGAGGAGTTTTACTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAAGGGTGGGACTAGAAACCGAGCAGCCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAAGTATCTGATATCGGTTTGAATTCTTCAATCCCTGAGGGAGCTGCTGGAAATATTAAGAGAACTATTTTGTCTGAGGGCGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAATAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAATCTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAATGAGCAGATCACTTAAATTCATGAAAAGTGCACCCATTCGCACCCGAAAACTAGCCAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGTTGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCGAACTTACTTTCCTCTGATGCATTACCTACAGTAGATGAAAAAGCAGATGATCAAGACGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGGGGAGGAAGATCCCGAAGAGGCTGAACTGAAGAAGGAAGCTATGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGTGCTTTCGATAGTGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACCGATGCACTTTCACAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGGACGCCAGAAATGTTTAGAGGCACTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCTCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCGTCAGTATTGAACAATTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGATGCAAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTCTGAATGAGCATCAACTTAACAGACTGCATTCTATTCTAAAGCCTTTCATGCTGCGGCGAGTTAAAAAAGATGTAGTATCTGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAACGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATGCGAGGTTCTAAATTGTTCAATTCAACAATTGCTCGTGGTGTTAGCAGAGAACTTTTTTGTAGATATTTTAATATTTATAGCCCAGAGAATGTTTTTCAATCTATCTTCTCTGAAGTGAATAAATCAAATGCGTCATTTATTAAAAGTGGAACTTTTGGCTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTATTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCGTAACGGAGACTATAGATAATGATCCTGAATACAGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTCACACGAATGTTATTGGTGCCTACAAAATCTGAGACAAAACTTTTTCAAAGAAGATTTGCTACTGGCCCCAGCCATGCCCCTTTTGAGGCATTAGTTGTCCCATATCAAGATAGGATTATATCCAATGCAAGACTTATTCACTCAGCATTCACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTGGAAGAGTTGCATGACCCTTGGGTTAAGAGGTTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGACCTAGAAAGCCAGCCTGCTCTTCAGTTAACCTACAAAATTTTCGGTTCATCTCCCCCTATGCAAAATTTTGACCCAGCGAAATTGCTCACTGACTCTGGGAAGCTTCAAACGCTTGACATATTATTAAAACGTTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGGCTTGATGGATCATCATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCCGGTGGATTGGGTATTAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATAGATTGGGTCAAACAAGAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAAAAAAGCACTGTACAAAACCTCGTCATGACTGGTGGTTCTACTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGCAAAGGATAAGCAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGACGGTGATGCGTCTCTGGAAGATCTAACAGACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCTCTGAGAAGCAAACGGCATCAAGGGCAGGGAATTTTCAAAAGACGAATGAGTTGAATAGTGCAACGGCGATGAACTATGAGTTGTATGATGCTACTCAAAATACTGATCCAGCGGTCCAGAAACCCAAGCGACCAAAGAAGGCAAAGAAGGTTGGGAATGATAAGTTTAACGACTCTTTTACTGGTACAGTAAATATATTCCCAGAGCAGACCCAATAG 4554 0.4135 MDHKRQFKDSLSYSSLFNLEPLMNFQLPQEDDDFDYNGNSSQDESRDSQGGAIANHINGSMRGREVNLLKKRKWSQNSDDEDKGNFCGTHMTEERYRSMLGEHVQKYKRRYKDTSSSPAQNRGQLLKSNTGLKARKLANEHRGGTHALETTLEWPNDINPHKPVIYRDAEFRQQYGPDRTIYEPASLDIGDGVTYKIPPPYDKLAAMLNLPSFSDIRVEEFYLKGTLDLGSLAAMMASDKKGGTRNRAAMGETLPQYDSLQARLKAMSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRTILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVNKDPSLIEKEEMERIGKIWVNIVRRDIPKHHRFFTGFHRKQLVDAKRFSENCQREVRMKMSRSLKFMKSAPIRTRKLARDVLLFWKRADKEMAELRKKEEKEVAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDQDAELGSSDAGPSGEEDPEEAELKKEAMKAAQEAVSKQRKLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGTLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRRDAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYYSGGHNPISYKMPKLVHQEIMRGSKLFNSTIARGVSRELFCRYFNIYSPENVFQSIFSEVNKSNASFIKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLYSMVRWEQKFINEVVDFVTETIDNDPEYSYLERGKVRAVTRMLLVPTKSETKLFQRRFATGPSHAPFEALVVPYQDRIISNARLIHSAFTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSDLESQPALQLTYKIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDILAPEDVVSLLLDDVQLEQKFKEIPLQAKDKQKRKQTVKGIRVNEDGDASLEDLTDSGAQGPDNDISLDPEGSKPSNKKRKAASEKQTASRAGNFQKTNELNSATAMNYELYDATQNTDPAVQKPKRPKKAKKVGNDKFNDSFTGTVNIFPEQTQ 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0886 1517 Coils Coil 513 533 - -
Lele07g0886 1517 FunFam DNA helicase INO80-like protein 1179 1429 - -
Lele07g0886 1517 FunFam Putative DNA helicase INO80 560 838 - -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 1391 1517 - -
Lele07g0886 1517 SMART ultradead3 584 779 IPR014001 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 489 517 - -
Lele07g0886 1517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 771 IPR014001 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 28 61 - -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 41 55 - -
Lele07g0886 1517 Coils Coil 425 464 - -
Lele07g0886 1517 Pfam Helicase conserved C-terminal domain 1211 1320 IPR001650 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 1501 1517 - -
Lele07g0886 1517 Gene3D - 826 897 IPR027417 -
Lele07g0886 1517 ProSiteProfiles DBINO domain profile. 353 478 IPR020838 GO:0003677
Lele07g0886 1517 CDD SF2_C_SNF 1199 1331 - -
Lele07g0886 1517 Pfam DNA-binding domain 348 477 IPR020838 GO:0003677
Lele07g0886 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1360 IPR027417 -
Lele07g0886 1517 Pfam SNF2-related domain 603 890 IPR000330 GO:0005524|GO:0140658
Lele07g0886 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 816 IPR027417 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 1391 1411 - -
Lele07g0886 1517 Gene3D - 584 825 IPR038718 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 1434 1448 - -
Lele07g0886 1517 Gene3D - 1177 1418 IPR027417 -
Lele07g0886 1517 PANTHER HELICASE SRCAP-RELATED 92 528 - -
Lele07g0886 1517 SMART helicmild6 1237 1320 IPR001650 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 1449 1484 - -
Lele07g0886 1517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1211 1364 IPR001650 -
Lele07g0886 1517 MobiDBLite consensus disorder prediction 110 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0886 Lele-ChrLele07 5219872 5229834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0886 609 890 RAD5 or RAD16-like Gene Family AT5G43530 29.052 5.48e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele07g0886 SNF2_N 1e-66 CL0023