Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0876 ATGCTGACGGCACTAGCAAATCCTACCTGCAGGAAATATCGTACACTGCTTCTGAAATCTGGTTCTGTTGGAAATTCTGTAAAGGTTATAGCTTCCATTACATATCAAATAGTCCCTGCAGATACAGAGTATGCAGAGATCCCACTTGCAGCGGTTAGTGCAATCTGTCAACGCAAGGGTCTTGGTCATATGTTGTTTGTTGAGCTACGGAAGAGACTTCAACATGTTGGTATTTGTTCAATTTTCTGCTGGGGAGACAAAGAATCTGAAGGGTTTTGGCTTAAACAGGGTTTCATATCAATAGCAGAGGTGGACACCAAAGGTAGAGCTCGCAGGTTACCTGTAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGCGGTTCTACTCTCATGGTTTGCCATCTAAGGACGGAATTTTCAGCTGATGCTACTAACTCTACGAAGAGTCTTCCCTCACAACATCAGAATCACTTGACATTTGGAAATGCTGAGAACGACCAGCCTAAATTTACAGGACATTTACACATTGATTTGAACTTTTCAAATAACTCCACTGATAGAACAGATAATATGGAGACTGGTCATCCTAAGGCTTTGTTGAGTGATGGCATTTCAAGAGAATTTGATAAATTGAGCGGTACATTTTATCGTGGTATATCTTTTAATCTGTCTGTCTGTGCTTCTTCCTCTCCTGTTTGTGGGTATTTTCTAGAATCTGATAGTTATTTAAAATTGAAATTCTGCAAAGATGGTGACACACAACCCATTGTTGCAGGATTTGCAAACGATGGAGTTGATGCCGAAACAAAGGATTGTTCTAATTCCACAAAAGGTCCAAAGAGGACCTGGGAAGCGTCTTTGTCATCATTAAAGTCTAAAAGAGTGAAAGGAAGCCATTTGGTTGATGGTGGATCTGAGTCTAGCTGGGGTTTTGTCTCAGAGGTTGATAGGACTAATTCTTGTTTGTGGGATGCTCATGGGGCGTTTCAAGTGGAAAATGTTCAGTGGAGCTTCCATGTGCTATCAAATAAACAATGCTTTAGAATCTTGCTGATGAATATTGCTGATGATGCTAAGAAAACGCACCTTACAAAGGTAATTGAATCCCTTGGCGGCACTGTTACCTCTGAAGGAAGCATGACCACACATGTTGTCACAGGCAAAGTGAGGAAAACTTTGAATTTCTGCACTGCCCTCTGCTCAGAGGCTTGGGTGGTCTCATCAGATTGGTTAAAAGAAAGCTATCGTGAAGGCAAATTTGTTGATGAGTTGGCTTACATATTAAATGACAAGGATTATCTATTGAAGTACAGATCTGATTTAAAAAGTGCAGTTTTCCGAGCAAAAGCCAACCCCCGAGCTTTGTTCAAGGGGTACAACGTGTGTATTGCAGATCATGTTCAACCTCCTGCTAAAGCACTATTTGCAATTGTGAGCTCTTCTGGTGGCAATGTTATTTGTGGGTTGAAGAAAGTAAATGAAGCATCCTCAACTATTTTTGTGACATGTGAAGAAGATATGGAAGAAGCAATGGTAACTGCAAAGCAGGGGATCAGAACTTTCAGTAGTGAGTGGTTTATGAACTGTGTTATGAGGCAGGAACTTGATATGGAGGCCTTTCAATTTGCAGAGTCCTTATGA 1644 0.4088 MLTALANPTCRKYRTLLLKSGSVGNSVKVIASITYQIVPADTEYAEIPLAAVSAICQRKGLGHMLFVELRKRLQHVGICSIFCWGDKESEGFWLKQGFISIAEVDTKGRARRLPVKADIRKALCFPGGSTLMVCHLRTEFSADATNSTKSLPSQHQNHLTFGNAENDQPKFTGHLHIDLNFSNNSTDRTDNMETGHPKALLSDGISREFDKLSGTFYRGISFNLSVCASSSPVCGYFLESDSYLKLKFCKDGDTQPIVAGFANDGVDAETKDCSNSTKGPKRTWEASLSSLKSKRVKGSHLVDGGSESSWGFVSEVDRTNSCLWDAHGAFQVENVQWSFHVLSNKQCFRILLMNIADDAKKTHLTKVIESLGGTVTSEGSMTTHVVTGKVRKTLNFCTALCSEAWVVSSDWLKESYREGKFVDELAYILNDKDYLLKYRSDLKSAVFRAKANPRALFKGYNVCIADHVQPPAKALFAIVSSSGGNVICGLKKVNEASSTIFVTCEEDMEEAMVTAKQGIRTFSSEWFMNCVMRQELDMEAFQFAESL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0876 547 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 29 142 - -
Lele07g0876 547 ProSiteProfiles BRCT domain profile. 350 429 IPR001357 -
Lele07g0876 547 CDD BRCT_PAXIP1_rpt6_like 456 537 - -
Lele07g0876 547 ProSiteProfiles BRCT domain profile. 452 536 IPR001357 -
Lele07g0876 547 CDD NAT_SF 28 84 - -
Lele07g0876 547 Pfam BRCA1 C Terminus (BRCT) domain 356 415 IPR001357 -
Lele07g0876 547 Gene3D BRCT domain 336 453 IPR036420 -
Lele07g0876 547 Gene3D - 8 113 - -
Lele07g0876 547 SUPERFAMILY BRCT domain 448 536 IPR036420 -
Lele07g0876 547 SUPERFAMILY BRCT domain 350 431 IPR036420 -
Lele07g0876 547 Gene3D BRCT domain 454 546 IPR036420 -
Lele07g0876 547 SMART BRCT_7 339 419 IPR001357 -
Lele07g0876 547 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 28 105 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0876 Lele-ChrLele07 5159061 5164327 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0876 07 5159061 5164327 Lele07g0876 07 5159061 5164327 ECH
Lele05g0836 05 5097045 5102924 Lele07g0876 07 5159061 5164327 hybridization
Lele06g0686 06 4181419 4186354 Lele07g0876 07 5159061 5164327 hybridization