LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g0832	ATGAAGTCCCGGTCCTTAGATTACTGGAGGAGTTACTTTCGAACGGCGAACTCGGATATATTTGATATTATCGATCATGCGATCTTGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGATTGCGAAGAGATGGAATCGCGGAACGGTTGTTTTTTTGTCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGAGTTGGCGGGGTCCGATGTTAACGAGGAATACGACGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCAGGTGCAAGTAGAGAGAGCAAGGCCCATAGTAGCAGAGATGACCATGGAGAGATGAACATGAACCACGTTAGCAATTATAGCTACGGAGATGCTGAAGCATTGACGGATGAGATTGAAGAAGAGTCTCAATTGGTTGGTGAGATTTTGAGGATCAAGGAAATTCTTCATAACAGCGAAGAAGAGTCTGAATCGGAATTGTTTGAGTCGTTAAGGAGGCTCCAGCTGATGGAACTGAGTGTGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCCGTCAATCCTTTCCGAAAGCATGGATCAAAGGAGATTCGTCAATTTGCACGGACTCTTATTGATAGCTGGAAGGAAATGGTAGATGAGTGGGTCAATGCTACTACCACAACCAATGCAGGTTATGAAGGTACCCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAGGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCGTCAATGGAGTTATCGCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGGGAAAATGGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAAGAGGAAACAACAGGCTTCTGTTGGGGTGGACACCATGGTCAAAGACAGCAAGAATCAGCAAGCAAAGAAAAATGAGGCTGTGGCGAAGCTAAACAAATCAGCAACTGTTGGTTCTGGTCCTGGCAGACCATTGAAATCAAGCATGCAACAGAGAGAGAATATGGAGCCAAGTATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAGGAAGCCTCTTGCTGGTCCGCAAGATAAGTCGAAGTGTTCAGATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAGAATGCCAAGAAGCAGAGAACAATCCAGGTTATGGAGTTGCAGGATCTCCCCAAGCAAGGAGGGATTAGCCACAGAAACACGCATTTCAAACCTATGAAGAACCAAAACAGAAATTGGGCTCAGGGACGAAAGTAG	1359	0.4606	MKSRSLDYWRSYFRTANSDIFDIIDHAILVAASDCPKEFRLRRDGIAERLFFCRMTRCLGCERVELAGSDVNEEYDGGCKSGFDRDGAEVEAGASRESKAHSSRDDHGEMNMNHVSNYSYGDAEALTDEIEEESQLVGEILRIKEILHNSEEESESELFESLRRLQLMELSVDLLKATEIGKAVNPFRKHGSKEIRQFARTLIDSWKEMVDEWVNATTTTNAGYEGTPDSVNPSVVDEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQSGEFIKNRENGRRPALDNQNIVKRKQQASVGVDTMVKDSKNQQAKKNEAVAKLNKSATVGSGPGRPLKSSMQQRENMEPSMLQKMDRSGVPRKPLAGPQDKSKCSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELQDLPKQGGISHRNTHFKPMKNQNRNWAQGRK	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	423	452	-	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	275	292	-	-
	Lele07g0832	452	SMART	TFS2_5	137	212	IPR003617	GO:0005634
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	342	358	-	-
	Lele07g0832	452	CDD	TFIIS_I	139	211	-	-
	Lele07g0832	452	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	128	223	IPR035441	-
	Lele07g0832	452	Pfam	TFIIS helical bundle-like domain	162	210	IPR017923	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	90	113	-	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	299	317	-	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	267	387	-	-
	Lele07g0832	452	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	136	221	IPR035441	-
	Lele07g0832	452	Coils	Coil	390	424	-	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	219	248	-	-
	Lele07g0832	452	ProSiteProfiles	TFIIS N-terminal domain profile.	138	213	IPR017923	-
	Lele07g0832	452	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	3	439	IPR044805	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	90	111	-	-
	Lele07g0832	452	MobiDBLite	consensus disorder prediction	436	452	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g0832	Lele-ChrLele07	4776107	4778705	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Lele07g0832		Med26	4.4e-10	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g0832	07	4776107	4778705	Lele07g0832	07	4776107	4778705	ECH
	Lele05g0792	05	4707832	4710965	Lele07g0832	07	4776107	4778705	hybridization
	Lele06g0637	06	3801483	3804119	Lele07g0832	07	4776107	4778705	hybridization