Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0827 ATGAGGGAAGAGGACTCGAATTGGTTCTCGAGATGGGAAGAGGAACTCCCATCTCCAGACGACCTCATGCCCCTCTCCCAAACCCTAATCACTCCCGATCTAGCCATGGCTTTTGATATCCGAAATCCTCATGTCAATACCTCACAACAACTCCCTCTGCCTCCTCCTCCGTCAAATCCTCTGCCTTCTCCTGGGAATCCCACTCACCCAAACTCCACGGACTTTGCTGATTCCGGTGAATTGGGTTCTGGTATTGGAGGCGAGGAACCCGCTCGCACCCTCAAGCGTCCTCGCCTCGTTTGGACTCCACAACTCCACAAGAGGTTTGTGGATGCTGTGGCACACTTGGGGATAAAGAATGCTGTTCCCAAGACTATAATGCAGTTGATGAGTGTGGATGGGTTGACCAGGGAAAACGTGGCTAGCCACTTGCAGAAATACCGGCTTTATCTGAAGCGCATGCAAGTATTGTCCGGTGGTGGCAGTGGCGGAGGTAGTGGCGGAGGAGGAGGAGGTGGTCCATTGGCTGCTTCAGCGGATCCTGCCACTGACCATTTGTTTGCTAGCTCCCCCGTGCCACCCCATTTCTTGCATCCAACTAGGCCTAATTCGGATCATTTCTTGCCGTTTGTGCCGGTCCAGACTCTGCACCACCACCATCAACAGCAGCACATGGCGGCGGCGGCCGCCGTGAATCCACAGTTGCAACCACAGTATCACAGACAGGTGGGACATTTTGGGTCACCACCAAATGGGCAGTTTGAGCATCCCTTTCTAACAAGGCAGTCTCAGGCTCAGCCACTTCACAGGATGGGAGCCCCAATGCACAATCCAGTAACTGCTAATTATGTGGAGGACATGGAATCGGCCAACGCGGTAGGAGCGAGAAAGGTTCTTACTTTATTTCCTACTGGGGATGATTGA 924 0.5325 MREEDSNWFSRWEEELPSPDDLMPLSQTLITPDLAMAFDIRNPHVNTSQQLPLPPPPSNPLPSPGNPTHPNSTDFADSGELGSGIGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQVLSGGGSGGGSGGGGGGGPLAASADPATDHLFASSPVPPHFLHPTRPNSDHFLPFVPVQTLHHHHQQQHMAAAAAVNPQLQPQYHRQVGHFGSPPNGQFEHPFLTRQSQAQPLHRMGAPMHNPVTANYVEDMESANAVGARKVLTLFPTGDD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0827 307 MobiDBLite consensus disorder prediction 49 67 - -
Lele07g0827 307 SUPERFAMILY Homeodomain-like 93 153 IPR009057 -
Lele07g0827 307 MobiDBLite consensus disorder prediction 1 24 - -
Lele07g0827 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 152 IPR017930 -
Lele07g0827 307 MobiDBLite consensus disorder prediction 1 18 - -
Lele07g0827 307 FunFam Two-component response regulator 92 155 - -
Lele07g0827 307 Pfam Myb-like DNA-binding domain 100 148 IPR001005 -
Lele07g0827 307 MobiDBLite consensus disorder prediction 161 190 - -
Lele07g0827 307 MobiDBLite consensus disorder prediction 45 91 - -
Lele07g0827 307 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 269 IPR044841 GO:0003700|GO:0006355
Lele07g0827 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 149 IPR006447 GO:0003677
Lele07g0827 307 Gene3D - 93 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0827 Lele-ChrLele07 4748052 4748975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0827 1 307 G2-like Transcription Factor Family AT3G10760 57.618 6.81e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele07g0827 Myb_DNA-binding 2.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0827 07 4748052 4748975 Lele07g0827 07 4748052 4748975 ECH
Lele05g0790 05 4675624 4690604 Lele07g0827 07 4748052 4748975 hybridization
Lele06g0632 06 3767072 3767998 Lele07g0827 07 4748052 4748975 hybridization