Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0800 ATGCAGTTCACTTTCCCCAGAACCAATGACTTCAGTCAGATTGAATACAAAAATCCATCGGCTTCACGATGTGACGTCGTTTCACACCCCTCCGATCCGAGCTTAGTGCAAGTAGTGCCTCCCCCACTACGCTCCCACTCCTTTTCTCCCTTCTCCCCCGAAAGGACCCAAACCAACCTTCACCAGTTTCCCTCTACCCTATTTATTCGCTCTTTAAATTTTCCCCAATCCTCCCTCTTCCTCGCTCTCGTCCGTGTACGGTCCTCTTTTGTCTTCTTCTCAATTTCCATGGAACAAGAGCCGCTTCTTCCGAGTGAGGATCTTCGCCGCACTCGGGGTCCTGGTAGTAACCCCATGCTTCGCGCTTCCACCTTACGCGCCACTTTCACCCTCCCCTTAACTCGCTACACCACCCGTCTGATCGCGGCGGAGCACCACCGGATTTTATTCGGTGATTGTACGGAGAACCCATCCGAGGATGACGATGACCGACCGCTTGAGGATGGCAGTTGCGCCTATTCGAGGCCCATTTTAGTTCTGGACCTTGTATGGAACCTGGCCTTCGTACTGGTCACTGCTGGTGTACTTCTTTCCACATTTACCGAGCATCCGTCCACCCCTTTGAGGCTTTGGCTCTGTGGGTATGCCTTTGAGTGTAGTCTGCATATGGTTTTTGTGTGTTTCGAGTATTGGCGGAGGACTCGAGATTTTTACGGTCCTGAGCTTGGGCCTTCGCTTTCCCAGGTTTGGAACAGCAATGTGAAGAAGTTAGAGTCCATGAACACACTGGTGTCATCTATTTGGTGGGTCCTTGGGTTTTATTGGATTGTGGTGGGTGGGCAGCAACTTTTGCAAGACTGTCCTCGTATCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGATGTGTTTTTTATTATCTTTTGCATTGGGATGGTATGTATAGTTTTCTTTGCTCTCTTCTTTTTCATCCCGATAGTAGCATTAGCTTATGCTATGCGAATCAGAGAAGGGGCATCAGAAGAGGATATCAGGTCTCTTCCTAAGTATAAGTTTAGTCAGTCAAATTCATTGGTGATGGTTGACGACAGTAATAAGCAAGTTTCTAAAGCAAGAATGGGTGCAAGCAATAGGAACCTTGTCAGTGAATTATTTCTCAACCCAGATGATTCTGAATGCTGCATCTGCCTTTCTCCATACGTTGAAGGGGCAGAACTTTATCGCCTTCCCTGCACACACCATTTTCATTGTGGATGCATCAGCAGATGGCTTCGGACAAAAGCAACCTGCCCTCTCTGCAAATTTAATATTCTTAGAAGTGATACATTGGTTTGA 1332 0.4752 MQFTFPRTNDFSQIEYKNPSASRCDVVSHPSDPSLVQVVPPPLRSHSFSPFSPERTQTNLHQFPSTLFIRSLNFPQSSLFLALVRVRSSFVFFSISMEQEPLLPSEDLRRTRGPGSNPMLRASTLRATFTLPLTRYTTRLIAAEHHRILFGDCTENPSEDDDDRPLEDGSCAYSRPILVLDLVWNLAFVLVTAGVLLSTFTEHPSTPLRLWLCGYAFECSLHMVFVCFEYWRRTRDFYGPELGPSLSQVWNSNVKKLESMNTLVSSIWWVLGFYWIVVGGQQLLQDCPRIYWLTVVFLAFDVFFIIFCIGMVCIVFFALFFFIPIVALAYAMRIREGASEEDIRSLPKYKFSQSNSLVMVDDSNKQVSKARMGASNRNLVSELFLNPDDSECCICLSPYVEGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRSDTLV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0800 443 Pfam Ring finger domain 391 433 IPR001841 -
Lele07g0800 443 CDD RING-H2_RNF111_like 391 435 - -
Lele07g0800 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 439 IPR013083 -
Lele07g0800 443 PANTHER TARGET OF ERK KINASE MPK-1 167 437 - -
Lele07g0800 443 SMART ring_2 392 432 IPR001841 -
Lele07g0800 443 SUPERFAMILY RING/U-box 384 438 - -
Lele07g0800 443 ProSiteProfiles Zinc finger RING-type profile. 392 433 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0800 Lele-ChrLele07 4588612 4592224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0800 155 440 C3H Transcription Factor Family AT1G68070 44.000 2.73e-85 263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0767 05 4513259 4516568 Lele07g0800 07 4588612 4592224 hybridization
Lele06g0603 06 3613503 3616870 Lele07g0800 07 4588612 4592224 hybridization