Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0752 ATGTATCTTTCCTGGCGAATATTCACTAAAGCCTCGCATCTCCGCCACTTCTCACAAGCCGCCGCAGCCGTCGTCCACCAAGAGCCTCTTGACCTCCTCCCACCATTCACGTATCTCGAAGGTTTTCCAAGGCCCGACCCCAGATACGCTGAGACGATCCTTGCGATACCTCGCTCCGCTTCTGGAAGTATCATTTCTGCCAAAGAGCGCAAGGCTGGACGAGTGCCTAGCATCGTCTTTGAGCAAGAGGATGGCCAGCACGGCGGCAACAAGCGCCTCATTTCCGTCCGTACCAATCAGATCCGAAAGCTCGTCAACCATCTCGGTCGATCATTCTTTTTGTCCAGACTCTTTGACCTGGAGGTTCGGTCGGAGTTTGAGTCCGAAGATATTGTAGAGAAGATTCGGGTTTTGCCCCGGCTGCTTCACCTGCATGCAGGCAGTGATGTACCATTAAATGTTACATTCATTAGGGCTCCATCACATGCTTTGTTGAAAGTTAACGTTCCTCTTGTATTCAGAGGAGAAGATGTGTCCCCTGGATTGAAGAAAGGTGCTTCTTTGAATACCATCAAAAGGACTGTCAAGTACCTATGCCCCGCAGATATTATCCCGCCATACATCGATGTGGACTTGAGTGAGTTGGATGTGGGGCAGAAGATTGTTATGGGAGATCTCAAGCGATTAAGCTTTGAAGAAAAGGAAGAGACATTCGTAAACAGGAGCGTCATTAGCTTGCCTAGGGATCCAATTCCGTTGTGGCTCTATGATCTTGGTCATTCCAGGTTGAACACCATGAACTCGCCGGGGTGGAGCAGGAGCATTTTGGTCTCGCCCATTAGCTCCCGCTCGGGTACTGACGTGCGAGCACTGTTTGAGCTGACTTTGGTGGACCAGAGTGGAAATGGGAAGCACAAAGTTCATAGCCACTTCGATCGATCGCTTGAAAGTGGGCCTTCTACGCTCAAGTACAGAGGCAGCATGTGGGGCTATAAGCGTTTTTTCAAACGAGCTCAGCTGGAAGCATCAACCTTCCTTAAAGATGACTGCTTGAAGATAAATTGTACCGTTGGTGTTGTGATTTCATCCATAGATTGTTCAAAATTAAATACAGTACAGTTTCATGCACATAAGTTTTTATTGACTGCTCGTTCTACTAAATTTGAGACTGAATTTTTCAATGAGATGGAGGAAGATGATCATGAAATCGTTATTACTGATATGGAACCGAAGGCACTACTTCATTTTATCTATAAAGATACTCTTATAGAAGATGAAGAGCTCTTCATGTCATATTCTTCACTCTCATCAGTATCTGACACATTTGCTGCAACGTTGTTAGCTGCTGCAGAAAAGTATGGCTTACCAAGACTTAAACTGTTGTGTGAGTCCATACTTTGCAAAGACATTTCTATAAGTTCTTGTGCATGTATTTTGGACCTTGCTGACAAATATCATGCCACAGAACTAAAGTCCATTTGTCTAAAATTTGCTGCGAAGAACCTTGTTGCTGTGATGCAATATGATAGTTTCGAGTATCTTAAGGAGAACTGTCCATAG 1560 0.4526 MYLSWRIFTKASHLRHFSQAAAAVVHQEPLDLLPPFTYLEGFPRPDPRYAETILAIPRSASGSIISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESEDIVEKIRVLPRLLHLHAGSDVPLNVTFIRAPSHALLKVNVPLVFRGEDVSPGLKKGASLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKIVMGDLKRLSFEEKEETFVNRSVISLPRDPIPLWLYDLGHSRLNTMNSPGWSRSILVSPISSRSGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPSTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVISSIDCSKLNTVQFHAHKFLLTARSTKFETEFFNEMEEDDHEIVITDMEPKALLHFIYKDTLIEDEELFMSYSSLSSVSDTFAATLLAAAEKYGLPRLKLLCESILCKDISISSCACILDLADKYHATELKSICLKFAAKNLVAVMQYDSFEYLKENCP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0752 519 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 263 357 IPR008974 GO:0005515
Lele07g0752 519 SUPERFAMILY TRAF domain-like 281 359 - -
Lele07g0752 519 Pfam Ribosomal L25p family 55 156 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele07g0752 519 Gene3D Potassium Channel Kv1.1; Chain A 358 471 IPR011333 -
Lele07g0752 519 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 21 227 - -
Lele07g0752 519 SMART BTB_4 355 470 IPR000210 GO:0005515
Lele07g0752 519 Pfam BTB/POZ domain 371 469 IPR000210 GO:0005515
Lele07g0752 519 SUPERFAMILY Ribosomal protein L25-like 52 228 IPR011035 GO:0006412
Lele07g0752 519 CDD MATH 276 357 IPR002083 GO:0005515
Lele07g0752 519 Pfam Ribosomal protein TL5, C-terminal domain 165 227 IPR020057 -
Lele07g0752 519 ProSiteProfiles BTB domain profile. 355 417 IPR000210 GO:0005515
Lele07g0752 519 Gene3D - 472 519 - -
Lele07g0752 519 CDD Ribosomal_L25_TL5_CTC 52 158 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele07g0752 519 Gene3D Ribosomal protein L25, beta domain 163 239 IPR037121 -
Lele07g0752 519 Gene3D Ribosomal Protein L25; Chain P 52 159 IPR020056 -
Lele07g0752 519 SUPERFAMILY POZ domain 370 468 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0752 Lele-ChrLele07 4256128 4263375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele07g0752 BTB 4.4e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0752 07 4256128 4263375 Lele07g0752 07 4256128 4263375 ECH
Lele06g0545 06 3266186 3267093 Lele07g0752 07 4256128 4263375 hybridization