Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0712 ATGGACATTTGCTGGAATGTATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTTCTTTCACCTTCTTGCTCAAAGTTTTCTTCCTTCTCAACCAGCCTCGACGATCTCTTCTCTGCTCAGAACACGGAGGTGGATGTCGGATTGGAGTGGCTGTCAGTTTTTGTGGAAGACTGCTTTTCAAGCCAAGCAAGTTGTCTCTTGGCACCTCCAGATGTTCATCACCAAGCTACAACCACAACAACCTCAGAACCTTCAAAACCATTTCAGAGACCTCACCAGAATGACTCTTCTCTGCAAAATTTTGCAGTGCCCGGAAAAGCAAGAAGCAAAAGGAAAAGGCTTTCTGCTCCGAGAGCCAAAGACTCTTTAAGCACATGGTCAAACCATTTAAACCCACAAAACGAAGCCATAAGCTCAGACCCTCCTCTGCTCAAACAAGCTTACTGGTTAGCAGACAGTGAACTCATCGTTCCAAACAAGAAACAGAAGGAAGAAGAAAGCAAAGAGGAAGAAGAAGAAGAAGAGAAGATGATGATGGTGAGGAAGGAGTCGGAGAGTGAGGTCAGCAATGGGCAAAATGCAATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAAACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCAACTTTTGTGAGCTACCTGCACTCAAATTCCCACAAGAAAGTCATGGAAATGAGAATGTCTCTTGTTTCTTCTCCTTCTTCTTCTTCTACTACTACTCCCAGGGATGTAAATCAAACCCAGCAAGTTTAG 858 0.4627 MDICWNVSVSGECKQEQVLSPSCSKFSSFSTSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSQASCLLAPPDVHHQATTTTTSEPSKPFQRPHQNDSSLQNFAVPGKARSKRKRLSAPRAKDSLSTWSNHLNPQNEAISSDPPLLKQAYWLADSELIVPNKKQKEEESKEEEEEEEKMMMVRKESESEVSNGQNAMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSPSSSSTTTPRDVNQTQQV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0712 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 257 - -
Lele07g0712 285 SMART GATA_3 193 247 IPR000679 GO:0006355|GO:0043565
Lele07g0712 285 MobiDBLite consensus disorder prediction 75 103 - -
Lele07g0712 285 Coils Coil 160 183 - -
Lele07g0712 285 MobiDBLite consensus disorder prediction 120 139 - -
Lele07g0712 285 PANTHER GATA TRANSCRIPTION FACTOR 21 268 - -
Lele07g0712 285 ProSitePatterns GATA-type zinc finger domain. 199 224 IPR000679 GO:0006355|GO:0043565
Lele07g0712 285 Pfam GATA zinc finger 199 233 IPR000679 GO:0006355|GO:0043565
Lele07g0712 285 FunFam GATA transcription factor 185 275 - -
Lele07g0712 285 MobiDBLite consensus disorder prediction 75 139 - -
Lele07g0712 285 Gene3D - 188 264 IPR013088 GO:0006355|GO:0008270
Lele07g0712 285 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Lele07g0712 285 MobiDBLite consensus disorder prediction 263 285 - -
Lele07g0712 285 ProSiteProfiles GATA-type zinc finger domain profile. 193 229 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0712 Lele-ChrLele07 4032484 4033717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0712 20 261 C2C2-Gata Transcription Factor Family AT4G32890 41.870 1.54e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele07g0712 GATA 7.4e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0712 07 4032484 4033717 Lele07g0712 07 4032484 4033717 ECH
Lele05g0676 05 3989437 3990697 Lele07g0712 07 4032484 4033717 hybridization