Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0660 ATGACGACCAGATACTGGGTAGTCTCTCTCCCCGTTCAAAATTCGTCATCTGCTCTCTGGACTCAATTGCAGGAACAAATCTCCAAGCATTCTTTCGATACTCCTCTTTACAGATTCAATATACCTAATCTCCGGGTCGGAACCCTAGATTCCCTTCTTTCTCTCAGCGACGATCTTGTGAAGGCAAACAGTTTCTTGGAAGGAGTGTCACACAAGATCAGGCGACAGATTGAGGAATTGGAGAAAGTTTCGGGCGTTGTTAGCAGCAGTCTCACAGTTGATGGGGTGCCAGTCGATTCATACTTGACCAGGTTTGTTTGGGATGAAGCGAAGTACCCGACTATGTCACCTTTGAAGGAGATTGTGGATGGTATTCACGGCCAAGTGGCAAAGATTGAGGATGATCTGAAGGTTCGTGTTGCTGAGTATAACAATATCCGGAGTCAACTAAATGCTATCAACCGAAAGCAAAGCGGAAGCTTGGCTGTCCGTGATCTTTCCAACCTGGTAAAACCTGAGGATGTTATAACTTCAGAACATTTAACTACCCTACTTGCAATTGTTCCTAAGTATTCTCAAAAGGACTGGCTCTCAAGCTATGAAACATTGACAAGCTATGTGGTACCCAGGTCTTCCAAGTTGTTGTATGAGGATAATGAGTATGCTCTTTATACTGTAACACTCTTCACACGTGTTGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGATTCCAAATTCGTGATTTTGAGTACAGTCAAGAATCACATGAAAGTCGGAAGCAGGAGCTAGACAAGTTGGTGCAAGATCAAGAAAGCACAAGAGGAATTCTTTTGCAGTGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTATACGTGTATTTACTGAGAGCATTCTGAGATATGGTTTGCCACCATCTTTCCTGGCAGCTGTCTTAGCTCCGTCTGCAAAAAGTGAGAAGAAAGTACGTTCCATACTTGAAGGCTTGGGTGACAGCGCAAACAGTGCATACTGGAAGACTGAGGATGAAGCAGTGGGTGGTATGACCGGTCTAGCGGGGGATTCTGATGCCCATCCGTATGTCTCCTTCACTATCAATCTCGTATGA 1131 0.4439 MTTRYWVVSLPVQNSSSALWTQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKANSFLEGVSHKIRRQIEELEKVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVAEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDVITSEHLTTLLAIVPKYSQKDWLSSYETLTSYVVPRSSKLLYEDNEYALYTVTLFTRVADNFRTSAREKGFQIRDFEYSQESHESRKQELDKLVQDQESTRGILLQWCYTSYGEVFSSWMHFCAIRVFTESILRYGLPPSFLAAVLAPSAKSEKKVRSILEGLGDSANSAYWKTEDEAVGGMTGLAGDSDAHPYVSFTINLV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0660 376 Gene3D Vacuolar atp synthase subunit c; domain 1 7 334 - -
Lele07g0660 376 Gene3D - 41 312 - -
Lele07g0660 376 SUPERFAMILY Vacuolar ATP synthase subunit C 1 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Lele07g0660 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lele07g0660 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lele07g0660 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lele07g0660 376 FunFam V-type proton ATPase subunit C 163 251 - -
Lele07g0660 376 Gene3D - 163 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0660 Lele-ChrLele07 3773849 3778165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0660 1 375 Primary Pumps ATPases(2) AT1G12840 82.133 0.0 654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0660 07 3773849 3778165 Lele07g0660 07 3773849 3778165 ECH
Lele07g0660 07 3773849 3778165 Lele08g0459 08 2801891 2805831 ECH
Lele05g0629 05 3714865 3718839 Lele07g0660 07 3773849 3778165 hybridization
Lele06g0445 06 2728089 2732919 Lele07g0660 07 3773849 3778165 hybridization