LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g0597	ATGATCACTAAGCTTCTCCACCTGAGAGCTTTGGCCTTTTTGTTGTTGTTCTTCTTCTTTTTCGTCTTTTCGCTTGGAGAAGAGCTGATCAGCTGCAACACAACATCCCCAGATGTCTCTGGCTACTACCGTTGCAGTAATAATGAATCACAATGTGGAACATTTGCAGTTTTCTTCACCAATTCATACTACTCATCTCTCTTCAACTTGAGCTTTTACTTGGGATTCAATCGTTATGTGATTGCAGATGCAAATGGGTTTTCTGCAGAAACAGAGTTTCTTCTTCATGAACAACCTTTACTAGTACCAATAGACTGCAAATGCAAAGGTGGCTTCTTTGGCGCTGAAATAACCAAAATTACCATTGAAGGTGAGAGCTTTGATGGTATTGCTCAATCTCTGGAAGGATTGACAACTTGCATGGCTATTAGTGAAAAGAATCAAGGCGTATCACCTCGGGATCTTGATAATGATATCAGATTGATGATCCCTTTGAGATGTGCATGTCCCTTATCATCATCATCTAAAGTTTCTCCAGAGCCGAAGCTTCTGATTTCTTACCCTGTGACAGAAGGCGATACAGTTCACAATTTGGCATCAAAGTTTAATACTACCGCCGAAGCAATAATCTCCGCAAATAACATATTTCCCAAGGATTTCAAACCTGATGCGAAGCTCACACCTTTTACCTCTCTTCTGATCCCAGTCAATGGTAAGCCTGTTCTTGGTTCTCTGGCTAAACCCAAGGAACCCAGTTCTGGTAATCGATCAAGCAGCAATATTACAGTGATTAAACCATCACACAGGAAGCCCAAGACGTGGAAGGCTGAATTGTACATTGGCTTAGCTGGGGTCGCAGTTGGACTTTTGTTTGCTTTACTGGCAGCATTTGTTGTGGTTCGATTGAGGAACGAGAAGAAAGAGAAATCAGTCAAAAGAAACAATTTGGAGCGGCAACATCTTAATATAAGCGTAAGAACCACCAGCGACAAGAAAGTTTCGTTCGATAGATCCCAGTATGGGAAAATCATCGACGCGACTCCTCGTAAGATGCTGCTGGAGAAATACACCATTGAAGACCTGAGAAAGACAACGGAGGATTTCAGTTCAAGCAATATCATAGAAGGATCTGTATTTCACGGCCGTCTAGAAGGGAAGAGCATAGCAATCAAACAAACAAACACAGAAACGGCGTTAAAAGTCGATCTTGGGCTCTTCCATAACACAATCCACCATCACCCCAACATTCTTCGAATGCTCGGAACGTGTTTGACAGAAGATCCCGAGTCATATCTGGTTTTCGAGTATGCAAAAAACGGGTCTTTGAAAGACTGGCTTCATGGTGGGTTGGCCATAAAGAACGAGTTCATATCATCCTGCTATTGCTTCCTCACATGGAGTCAGAGACTCAGGATCTGCCTCGACGTGGCCATGGCCCTGCAATATATGCACCACGTCATGAACCCAAGCTATGTCCATAGAAATATAAAGAGCAGAAACATCTTTCTAGACGAAGAATTTGGCGCCAAGATAGGCAACTTTGGGATGGCAGGTTGTGTTGAGAACGAAACAGAGGATCCAAAGTTCTACTCAACCAACCCTGCATCTTGGAGTCTTGGTTATTTAGCACCAGAATATGTATACCAAGGTGTGATTTCTCCAAGTACTGATATTTTTGCTTATGGTGTGGTTTTGCTGGAAGTTTTGTCTGTTCAGACACCTATAAGCAGACCCAATGGGAAGGGAGAAGGGAGCGTTTGGCTCACTGATAAAATAAACTCTGTTTTGAAGTCAGAAAATGAGGAAGAACTGAGAGGGTGGATGGACAAGGCATTAGGTGAGAATTATTCATTGGATGAAGCAATAACAGTGGCGAATATTGCTAGAGCTTGTGTGGAGGAAGATTATGGAATGAGGCCAAGTGCAGGGCAAATTGTGGAGAAGCTAACCAGATTGGTGGAGGAACTTCCAGAAGAAGACCACATGTTGATGTCTGAAAGCTCTTCCAAGCCTCTGGTGAAAGCACTGGCAAAAGCCTGA	2040	0.4304	MITKLLHLRALAFLLLFFFFFVFSLGEELISCNTTSPDVSGYYRCSNNESQCGTFAVFFTNSYYSSLFNLSFYLGFNRYVIADANGFSAETEFLLHEQPLLVPIDCKCKGGFFGAEITKITIEGESFDGIAQSLEGLTTCMAISEKNQGVSPRDLDNDIRLMIPLRCACPLSSSSKVSPEPKLLISYPVTEGDTVHNLASKFNTTAEAIISANNIFPKDFKPDAKLTPFTSLLIPVNGKPVLGSLAKPKEPSSGNRSSSNITVIKPSHRKPKTWKAELYIGLAGVAVGLLFALLAAFVVVRLRNEKKEKSVKRNNLERQHLNISVRTTSDKKVSFDRSQYGKIIDATPRKMLLEKYTIEDLRKTTEDFSSSNIIEGSVFHGRLEGKSIAIKQTNTETALKVDLGLFHNTIHHHPNILRMLGTCLTEDPESYLVFEYAKNGSLKDWLHGGLAIKNEFISSCYCFLTWSQRLRICLDVAMALQYMHHVMNPSYVHRNIKSRNIFLDEEFGAKIGNFGMAGCVENETEDPKFYSTNPASWSLGYLAPEYVYQGVISPSTDIFAYGVVLLEVLSVQTPISRPNGKGEGSVWLTDKINSVLKSENEEELRGWMDKALGENYSLDEAITVANIARACVEEDYGMRPSAGQIVEKLTRLVEELPEEDHMLMSESSSKPLVKALAKA	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g0597	679	Gene3D	LysM domain	171	241	IPR036779	-
	Lele07g0597	679	SMART	LysM_2	186	235	IPR018392	-
	Lele07g0597	679	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	17	656	-	-
	Lele07g0597	679	Pfam	LysM domain	187	235	IPR018392	-
	Lele07g0597	679	SUPERFAMILY	LysM domain	185	226	IPR036779	-
	Lele07g0597	679	MobiDBLite	consensus disorder prediction	244	266	-	-
	Lele07g0597	679	FunFam	PTI1-like tyrosine-protein kinase 3	437	663	-	-
	Lele07g0597	679	MobiDBLite	consensus disorder prediction	250	266	-	-
	Lele07g0597	679	SUPERFAMILY	Protein kinase-like (PK-like)	348	649	IPR011009	-
	Lele07g0597	679	Coils	Coil	299	319	-	-
	Lele07g0597	679	Pfam	Protein tyrosine and serine/threonine kinase	385	649	IPR001245	GO:0004672\|GO:0006468
	Lele07g0597	679	ProSiteProfiles	LysM domain profile.	185	234	IPR018392	-
	Lele07g0597	679	CDD	LysM	185	234	IPR018392	-
	Lele07g0597	679	ProSiteProfiles	Protein kinase domain profile.	329	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele07g0597	679	Gene3D	Phosphorylase Kinase; domain 1	343	436	-	-
	Lele07g0597	679	Gene3D	Transferase(Phosphotransferase) domain 1	437	670	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g0597	Lele-ChrLele07	3404662	3406701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g0597	43	674	LysM Receptor-like Kinase (LYKs) Gene Family	AT3G01840	39.818	1.79e-152	454

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele07g0597		PK_Tyr_Ser-Thr	4.4e-30	CL0016