Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0541 ATGAGTTCAGCGTATTCAAGTTTCAGGCATCTTCCTGAAATCTCATGCATAGAGCTAAACTGGACACAACCAATCACTCTGGCTGCCTGCTTACTCTCGATGTCGAAATCATTATATCTAACTAACGTATCGTTCTTCTTATCTAATTCTAGAGTTATGGCCTCTGCAAGAGTTTTCTATCATGTGCTTCCATCTACGAAATTCACATCCTTCAACAAAGCAGACACTTTCTCCCTATCATCCTCCCTACGAAACTACTCCACCACTCAAACCCCATACCCACTTCAGTACGAGATGATTATCAACCGTCCAGTCAATTCCGTGCATGCCCACTCTCGCCGTCGACCTGTTCGACAAAATGACTCCAACGCAGAGAGCTTTCCTGACTCCGAGTCTCCGGAAGAGTCCGTTTCTGAATTGGCATTAGATAGCTGGGTCGATCGGAAATTGGCTTTTGAGGAAGAGGCTAATCAACCCGGTTCCCAAAAAGTGGAGCTTGACAAGGCTAAGAAAAAATATTACAGAAAACGGAGCAAGAGGATGTATGGGTCGGACTCTGATGAAGAAAATAGGGGACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTAGAGCTTCCTACATTGCACAAGAGAGAGGAGGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGTTGGAGAAGAAATATTTCCCTGATCAGTGTCTTGATAAAGCGTTCCTGGAACCGGGAGAATCAAATGCAAACGTGAATGTAAATACGGATACAAAGACTAAGAGCAAGGCGAGGGAAAAGAAGAAAGTCAGGGAAGATAGAAGGGAGCAAAAAGATGAGGCTAGTGATGAAAGAAATGATAAGAAGTTGATATTCTTCGAGGAGAAACAAGAAGAGAAAAAGGATAATAGAGGATTGGTTAAGGAAGCAAGAGAAGATCTAACTGAAAAGAAGGTCGAAGAGTTCTTCAAATATTTGAAGAAAATTCCTAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGGGTCAAGGAATTCGGGGCTTCCTCCTAGATGGGATAGTCCTCGTGGAACCGTTGTTTTGGTTAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGCGGGAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTTGGTCATGCTGGAACTCTTGATCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTTGTGGATAGATATCAAGGGATGATTAAGGGCTATAGTGGTGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCGGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAGAACTGCAGCATCCTTTTATGGTGAGATTTGGCAAGTTCCTCCAATGTTCTCCGCCATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACATATATTCGGTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCGCATTTAACTGCTCTCCGGAGAGATTCAATAGGAGAATATTCAGCAGATGATGCATGGGACTTTGCAGAGCTGGAAGAGGCTATTTCCAAAAGTTATTTCTAA 1770 0.4271 MSSAYSSFRHLPEISCIELNWTQPITLAACLLSMSKSLYLTNVSFFLSNSRVMASARVFYHVLPSTKFTSFNKADTFSLSSSLRNYSTTQTPYPLQYEMIINRPVNSVHAHSRRRPVRQNDSNAESFPDSESPEESVSELALDSWVDRKLAFEEEANQPGSQKVELDKAKKKYYRKRSKRMYGSDSDEENRGPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNANVNVNTDTKTKSKAREKKKVREDRREQKDEASDERNDKKLIFFEEKQEEKKDNRGLVKEAREDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLGSRNSGLPPRWDSPRGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRTAASFYGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWDFAELEEAISKSYF 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0541 589 Coils Coil 304 324 - -
Lele07g0541 589 Pfam TruB family pseudouridylate synthase (N terminal domain) 391 541 IPR002501 GO:0006396
Lele07g0541 589 TIGRFAM TruB: tRNA pseudouridine(55) synthase 371 580 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele07g0541 589 Coils Coil 278 298 - -
Lele07g0541 589 SUPERFAMILY Pseudouridine synthase 371 583 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele07g0541 589 FunFam tRNA pseudouridine synthase B 366 588 - -
Lele07g0541 589 CDD PseudoU_synth_EcTruB 372 583 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele07g0541 589 Gene3D Pseudouridine synthase 366 588 - -
Lele07g0541 589 Pfam tRNA pseudouridylate synthase B C-terminal domain 542 585 IPR032819 -
Lele07g0541 589 MobiDBLite consensus disorder prediction 108 138 - -
Lele07g0541 589 MobiDBLite consensus disorder prediction 258 294 - -
Lele07g0541 589 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 242 587 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele07g0541 589 Hamap tRNA pseudouridine synthase B [truB]. 369 589 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele07g0541 589 MobiDBLite consensus disorder prediction 270 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0541 Lele-ChrLele07 3133573 3137267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0541 337 563 NAC Transcription Factor Family AT3G57150 31.718 4.65e-21 95.1