Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0422 ATGCGCACGCACGTTCGAGCGAATCGGCGGTGCTGCTTGTCTTGCATTTTAATGGGAAGAGGACGATTATTTGACATTTTCACAGAGGCTCGACGAATACGTCTCTCCCATCTTTATCCTTTACAGTTTATACGCGTCATAAACCCCATCCAATTCAAAACTCAGAGAAAGTTCTGCAAGACCTACCAGGAGTACATGCAAGGGCAGGAGAAGAAACTACCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAATGCAGAGTAGACTATCAACCCCAGAATCAGAATGCCCTCGTTGACGAAGCTCACGACCACACCGTCCGAACATGCCCCGATCATTGCCCAGTGTGCGATGGGACTTTCTTCCCTTCACTTCTCAATGAAATGTCAGAAATAGTAGGCTGCTTTAATCAGCGAGCGCAGAAATTATTAGATCTACATCTTGCTTCTGGCTTCAGAAAGTACTTGTTTTGGATCAAAGGAAAATTGCGAGGAAACCACACCGCTCTCATTCAAGAAGGCAAGGATCTGGTCACCTATGCACTTATAAATGCCGTTGCTATTCGAAAAATACTCAAGAAATATGACAAGGTTCATTATTCGAAGCAAGGCCAATTGTTCAAGTCTCAAGTCCAGAGTATGCATATGGAAATTCTTCAGAGTCCTTGGTTTTGTGAGCTGATGGCCTTGCACATCAATTTAAGGGAAACCAAGCCCCAGTCCCGGCGCGCAGCCGTGTTGTTTGATGGATGTTCTCTTACATTCAAGGATGGAAAACCATCAATCACTTGTCAGCTCTTTGATTCAATCAAACTTGATATTGACTTGACCTGTTCTATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCACCTATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTCACTATTGTTGATGGACTCAAGGAAGCAAATCCTAAAGCAAAATGTCCTCTCTGCCGAGAGAGTGGAGTTTATGAAGGTGCTATCCACTTGGAAGAGTTGAACATTCTGTTAGGGCGAAGGTGTCAAGAATACTGGGAAGAAAGACTTCAGGCGGAGAGGGCAGAGAGGCTTAAGCAGATTAAAGAGCATTGGGAATCAGAGTGCCGGGCTGTATTGGGCGTCTAA 1155 0.4485 MRTHVRANRRCCLSCILMGRGRLFDIFTEARRIRLSHLYPLQFIRVINPIQFKTQRKFCKTYQEYMQGQEKKLPGVGFKKLKKILKKCRVDYQPQNQNALVDEAHDHTVRTCPDHCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLLDLHLASGFRKYLFWIKGKLRGNHTALIQEGKDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQVQSMHMEILQSPWFCELMALHINLRETKPQSRRAAVLFDGCSLTFKDGKPSITCQLFDSIKLDIDLTCSICLDTVFDPVSLTCGHLFCYMCACSAASVTIVDGLKEANPKAKCPLCRESGVYEGAIHLEELNILLGRRCQEYWEERLQAERAERLKQIKEHWESECRAVLGV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0422 384 Pfam Zinc finger, C3HC4 type (RING finger) 277 330 - -
Lele07g0422 384 SUPERFAMILY RING/U-box 273 332 - -
Lele07g0422 384 ProSiteProfiles SPX domain profile. 56 211 IPR004331 -
Lele07g0422 384 ProSiteProfiles Zinc finger RING-type profile. 280 329 IPR001841 -
Lele07g0422 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 57 383 IPR033326 -
Lele07g0422 384 SMART ring_2 280 328 IPR001841 -
Lele07g0422 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 382 IPR013083 -
Lele07g0422 384 CDD SPX_BAH1-like 57 207 - -
Lele07g0422 384 ProSitePatterns Zinc finger RING-type signature. 295 304 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0422 Lele-ChrLele07 2375973 2378205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0422 277 338 C3H Transcription Factor Family AT4G28270 41.791 3.08e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0422 07 2375973 2378205 Lele07g0422 07 2375973 2378205 ECH
Lele05g0403 05 2289758 2291630 Lele07g0422 07 2375973 2378205 hybridization
Lele06g0219 06 1336990 1337558 Lele07g0422 07 2375973 2378205 hybridization