Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0415 ATGGATATAACGCTGCAGAGCTCGTTTCAAAGAAAAATGAGTAGACGTTCGAGCAGAACCGTCTACGTTGGGAATTTGCCGGGTGATATTCGCGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTTGAGGATTCTCAAGATGCTGAAGATGCAATTCGCGGTCGTGATGGCTATGATTTTGATGGACATCGGTTAAGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCCAGAGATCGATATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTTTCGAGGCGCTCTGAGTACCGTGTACTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGAGATGTGTGTTTTTCTCAAGTTTTTCATGATGGCAGGGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAGAGCTTATGTTCGTGTGAGGGAATATGATTCAAGGCGTGATTCCTCTAGAAGTCCTAGTCGTGGGCGATCTTATTCTAGGGGGCGAAGTTATAGCCGCAGTCGTAGCCGTAGTTACAGTCGAGGGCGTAGTCAGAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAGATCTCCTTCAAGGTCTGTTTCACGCTCACGTTCTCGCTCGAAGTCAAGGTCCCGTTCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAGTTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCCATTTTAG 939 0.4622 MDITLQSSFQRKMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSPARSPSRSVSRSRSRSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLPF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0415 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Lele07g0415 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Lele07g0415 312 MobiDBLite consensus disorder prediction 85 119 - -
Lele07g0415 312 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 12 268 - -
Lele07g0415 312 SMART rrm1_1 124 195 IPR000504 GO:0003723
Lele07g0415 312 SMART rrm1_1 20 90 IPR000504 GO:0003723
Lele07g0415 312 SUPERFAMILY RNA-binding domain, RBD 17 190 IPR035979 GO:0003676
Lele07g0415 312 Gene3D - 4 121 IPR012677 -
Lele07g0415 312 MobiDBLite consensus disorder prediction 198 270 - -
Lele07g0415 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Lele07g0415 312 CDD RRM2_SF2_plant_like 123 198 - -
Lele07g0415 312 FunFam serine/arginine-rich splicing factor SR34A-like 123 200 - -
Lele07g0415 312 CDD RRM1_SF2_plant_like 20 90 - -
Lele07g0415 312 MobiDBLite consensus disorder prediction 227 256 - -
Lele07g0415 312 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 13 122 - -
Lele07g0415 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lele07g0415 312 Gene3D - 122 200 IPR012677 -
Lele07g0415 312 MobiDBLite consensus disorder prediction 85 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0415 Lele-ChrLele07 2337664 2343585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0415 20 207 Eukaryotic Initiation Factors Gene Family AT4G34110 25.381 1.97e-06 47.4