Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0391 ATGGTCTCGCTGAAGCTCCAGAAGCGGCTCGCCGCCAGTGTACTCGAGTGCGGCAGAGGCAAAGTTTGGCTTGACCCAAATGAAGTCAACGAAATATCCATGGCGAATTCGCGCCAAAATATAAGGAAGTTGGTCAAGGATGGTTTCATCATACGGAAGCCAACCAAGATTCACTCCCGTTCACGTGCCCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACTAGAGAGGCACGACTTCCTACAAAAATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAAATCGACAAGCATATGTACCATGACATGTACATGAAAGTTAAGGGTAATGTGTTCAAGAATAAGAGAGTCCTAATGGAGAGCATCCACAAATCTAAGGCAGAGAAGGCAAGAGAGAAGACTTTGAGTGATCAGTTCGAGGCTAAGCGTGCAAAGAACAAGGCAAGCCGGGAAAGGAAAATCGCTAGGAGGGAGGAGCGATTGGCTCAGGGTCCTGGTGAGAAACCTGCTGCAGCACCGACTGCACCACCTGCGACGGCATCTCAACCATCAAAAAAATCCAAGAAGTGA 630 0.4905 MVSLKLQKRLAASVLECGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPAAAPTAPPATASQPSKKSKK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0391 209 FunFam Ribosomal protein L19 1 56 - -
Lele07g0391 209 FunFam Ribosomal protein L19 57 192 - -
Lele07g0391 209 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lele07g0391 209 MobiDBLite consensus disorder prediction 57 79 - -
Lele07g0391 209 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele07g0391 209 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele07g0391 209 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele07g0391 209 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lele07g0391 209 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lele07g0391 209 MobiDBLite consensus disorder prediction 57 85 - -
Lele07g0391 209 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lele07g0391 209 MobiDBLite consensus disorder prediction 149 184 - -
Lele07g0391 209 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lele07g0391 209 MobiDBLite consensus disorder prediction 149 209 - -
Lele07g0391 209 Gene3D - 57 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0391 Lele-ChrLele07 2215905 2217441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0391 1 209 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.211 6.14e-127 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0391 07 2215905 2217441 Lele07g0391 07 2215905 2217441 ECH
Lele05g0374 05 2139539 2141067 Lele07g0391 07 2215905 2217441 hybridization