Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0388 ATGTCTGACGTCGTTGGTTGTTATTACTCGGTGCTTGGGATAAGCAAGCAGGCCACCGATTGTGAAATCCGTGGCGCTTATCGTAAGATGGCTCTGAAATGGCATCCGGATAGGTTGACTAAAGATCCAAAGCTTGCGGTAGAAGCTAAAGGACGGTTTCAACAAATTCAAGAGGCTTATTCGGTTTTGTCTAATAAAGGCAAGAGAACCGTATATGATGCTGGCTTGTTTGGTCTGATTGGAGACGACGACGACGACGAGGGATTTGTTGATTTCATGCAAGAAATGGTCTTCATAACGCAGAAAGAGAGCCCCAAGGAATACACGTTGGAGGATCTTGAGAGACTGCTAATGGACATGATGGAAGGTGGAACGGGGAAATCTGAGTTTCAATCCCCCACTACTCCCACAAAAAAGATTCGGTTCTTTCAATTGTTGAGATTTTCAAATTCAAAACGAAATCGCTTGCTACATGTGTTTGAATCCAGAAGAGGGGAAAAGAGGGAAGCTGAGGAGTCTGACATGAAATGGAACAAAGGTGAAAGGCTCATTCTCGAACGCAACGGCGTCACATGGCCGCAGCCTATCATTAGGTCGAAAGCTGACCTAAGCTTCCATACTTCCTCCATCTTCCTTCTATCAGGCTGTTCATCTTCCAGCTGTTCGACTTCTCCCACTTCCGGCGGCTTCCACATCCTTGGTTGCTCACTGCGTCCTCATTCAAAAGGGCAGAGGATGGCCTTCTACGCTATTTCGCGGCGTTTATCGGGTGGATCATCGGTGGCGCAGCCTTCCCTGGCCTTGCGTCTTGCTATCTCTTCTAGATCGTATTCGACTTCGTTTAGAGAAGAAAGAGATACCTTTGGACCAATTCAAGTCCCATCCGACAAATTATGGGGCGCGCAAACTCAAAGGTCGTTGCAGAATTTTGATATCGGTGGCGAGCGGGAACGAATGCCTGAACCCATTATTCGCGCCTTTGGCATCTTAAAAAAAGCCGCTGCTAAGGTGAACTTAGAATATGGCCTTGATCCCACCATTGGGAAAGCTATAATGCAGTCAGCACAAGAAGTAGCCGAGGGAAAGCTAAATGACCATTTTCCTCTAGTTGTATGGCAAACTGGCAGCGGCACTCAAAGCAACATGAATGCTAATGAGGTTATTGCAAACAGAGCAGCTGAGATTCTTGGTCATAAGCGTGGTGAAAAGTTTGTGCACCCGAATGACCATGTCAATAGATCACAATCTTCTAATGATACATTCCCAACTGTAATGCACATTGCAGCTGCAATGGAAATAAATTCAAGACTAATTCCAAAACTGAAAACCTTACATTCTTCACTACATGCCAAGTCTGTTGAATTCAAAGATATTGTGAAGATTGGGCGCACCCATACTCAAGATGCAACTCCATTAACACTTGGGCAGGAGTTTAGTGGCTATACTACACAAGTGAAGTATGGAATTGATAGAGTGATGTGCACTTTGCCCCGAATTTATCAGTTGGCACAGGGCGGAACAGCTGTTGGGACTGGATTGAATACAAAGAAGGGGTTCGATGTTAAGATAGCAGCAGCAGTAGCTGATGAAACAAACCTTCCCTTTGTCACAGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAAATAGTGGAGCCCTCAACACAATTGCAGCATCTTTAATGAAGATTGCGAATGATATACGTTTATTAGGAAGCGGTCCGCGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAATGAACCAGGAAGCAGTATTATGCCTGGGAAGGTTAACCCTACCCAGTGTGAGGCTCTAACAATGGTCTGTGCACAGGTCATGGGAAACCATGTAGCCATCACAGTTGGTGGAGCAAACGGTCATTTTGAACTCAATGTATATAAACCGATGATTGCAAGTTGTCTCCTGCATTCACTTAGACTGCTCGGAGATGCATCAGCTTCCTTTGAAAAGAATTGCGTAAGAGGTATCCAAGCTAATAGGGAAAGAATTTCAAAATTATTGCATGAGTCACTAATGCTTGTCACATCCTTGAACCCAAAAATTGGTTATGACAAAGCCGCAGCAGTTGCCAAGACAGCGCACAAAGAGGGAACCACTCTTAAGGAATCTGCGTTGAAGCTCGGAGTACTTACCCCTGAAGAATTTGACACTCTCGTGGTGCCCGAGAAAATGATTGGCCCAACTGATTGA 2226 0.451 MSDVVGCYYSVLGISKQATDCEIRGAYRKMALKWHPDRLTKDPKLAVEAKGRFQQIQEAYSVLSNKGKRTVYDAGLFGLIGDDDDDEGFVDFMQEMVFITQKESPKEYTLEDLERLLMDMMEGGTGKSEFQSPTTPTKKIRFFQLLRFSNSKRNRLLHVFESRRGEKREAEESDMKWNKGERLILERNGVTWPQPIIRSKADLSFHTSSIFLLSGCSSSSCSTSPTSGGFHILGCSLRPHSKGQRMAFYAISRRLSGGSSVAQPSLALRLAISSRSYSTSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGERERMPEPIIRAFGILKKAAAKVNLEYGLDPTIGKAIMQSAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAAMEINSRLIPKLKTLHSSLHAKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVMCTLPRIYQLAQGGTAVGTGLNTKKGFDVKIAAAVADETNLPFVTAENKFEALAAHDAFVENSGALNTIAASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGANGHFELNVYKPMIASCLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDKAAAVAKTAHKEGTTLKESALKLGVLTPEEFDTLVVPEKMIGPTD 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0388 741 FunFam Fumarate hydratase class II 684 741 - -
Lele07g0388 741 Gene3D - 282 416 IPR024083 -
Lele07g0388 741 Gene3D Fumarase/aspartase (Central domain) 417 683 - -
Lele07g0388 741 Pfam Lyase 289 619 IPR022761 -
Lele07g0388 741 CDD DnaJ 7 65 IPR001623 -
Lele07g0388 741 PRINTS DnaJ domain signature 9 27 IPR001623 -
Lele07g0388 741 PRINTS DnaJ domain signature 27 42 IPR001623 -
Lele07g0388 741 PRINTS DnaJ domain signature 48 68 IPR001623 -
Lele07g0388 741 TIGRFAM fumC_II: fumarate hydratase, class II 281 738 IPR005677 GO:0004333|GO:0006106|GO:0045239
Lele07g0388 741 FunFam Fumarate hydratase, mitochondrial 416 683 - -
Lele07g0388 741 ProSitePatterns Fumarate lyases signature. 594 603 IPR020557 GO:0003824
Lele07g0388 741 Gene3D - 684 741 - -
Lele07g0388 741 PANTHER ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE 273 740 IPR005677 GO:0004333|GO:0006106|GO:0045239
Lele07g0388 741 PRINTS Fumarate lyase superfamily signature 411 429 IPR000362 -
Lele07g0388 741 PRINTS Fumarate lyase superfamily signature 594 610 IPR000362 -
Lele07g0388 741 PRINTS Fumarate lyase superfamily signature 457 475 IPR000362 -
Lele07g0388 741 PRINTS Fumarate lyase superfamily signature 548 575 IPR000362 -
Lele07g0388 741 Pfam Fumarase C C-terminus 685 737 IPR018951 GO:0006099|GO:0016829
Lele07g0388 741 Gene3D DnaJ domain 4 85 IPR036869 -
Lele07g0388 741 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Lele07g0388 741 SMART dnaj_3 6 68 IPR001623 -
Lele07g0388 741 CDD Fumarase_classII 282 736 IPR005677 GO:0004333|GO:0006106|GO:0045239
Lele07g0388 741 SUPERFAMILY Chaperone J-domain 7 72 IPR036869 -
Lele07g0388 741 FunFam Fumarate hydratase, mitochondrial 282 415 - -
Lele07g0388 741 Pfam DnaJ domain 8 73 IPR001623 -
Lele07g0388 741 SUPERFAMILY L-aspartase-like 281 737 IPR008948 GO:0003824
Lele07g0388 741 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Lele07g0388 741 Hamap Fumarate hydratase class II [fumC]. 281 739 IPR005677 GO:0004333|GO:0006106|GO:0045239
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0388 Lele-ChrLele07 2199944 2208485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0388 7 74 C2H2 Transcription Factor Family AT1G74250 47.826 1.51e-12 68.9