Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0366 ATGATATTCATAACGTGGACAGCACAGTTTCTAGCTGGTCTCAATTTCAAAGAGAGAGAGGGAGACAGAAGACAGAGTAACAGAAAGAATTTGAAAAAACAAACGAAGCTGTTCCCTGAAACAGAGAGAAGAAGGTGGGAGAAAAATATGGAAGAAGTAGTATTATTGGTTGACGATTTAAAATTACTTTCCGGGATTCCTCGCTGTAGAATATGCCACGAAGAAGAATTTGAAAGCTCCGAAAACCTTGAAGCTCCCTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCGTACAGAGATGGTGCAACGAGAAAGGAAACACAACTTGCGAAATATGTCTTCAGCAATATGAACCTGGATATACAGCACCCCAAAAGAAATCTCAGATAAATGACGAGGCTTTGACAATCAGGGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGCGCAAGATTAGAGGGTGGCGACGAAGGAATCACAACAGAAGGAGATTACTCTCAGTGCACGTCTACTGCTGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGTTGCTTGTGAGACATCTTTTCGTAGTGCTTACAAGTACAGAGGAAGACTACCCATTTTCACTTTTGACGGTGTTTATACTAAAAGCAAGCGGCATCATTCTACCCATGTACATAATCATGTGGGCGATCGGAGGCATATATGGCAGTATTCGACGTCACTACCAGGATTCTGACGACGACGACACGTCAATATTCGACAGTGAAGATGAAGAGAGGGAGCTGATTCATGATACCATTGTTCCACATCAATAA 834 0.4257 MIFITWTAQFLAGLNFKEREGDRRQSNRKNLKKQTKLFPETERRRWEKNMEEVVLLVDDLKLLSGIPRCRICHEEEFESSENLEAPCACSGTVKFAHRDCVQRWCNEKGNTTCEICLQQYEPGYTAPQKKSQINDEALTIRDSLQIPRDEEPLSARLEGGDEGITTEGDYSQCTSTADRSASCCRSLALTFTLMLLVRHLFVVLTSTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGSIRRHYQDSDDDDTSIFDSEDEERELIHDTIVPHQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0366 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 127 IPR013083 -
Lele07g0366 277 Pfam Protein of unknown function (DUF3675) 122 237 IPR022143 -
Lele07g0366 277 CDD RING_CH-C4HC3_MARCH 69 116 - -
Lele07g0366 277 ProSiteProfiles Zinc finger RING-CH-type profile. 61 123 IPR011016 GO:0008270
Lele07g0366 277 Pfam RING-variant domain 69 116 IPR011016 GO:0008270
Lele07g0366 277 SUPERFAMILY RING/U-box 68 121 - -
Lele07g0366 277 FunFam E3 ubiquitin-protein ligase MARCH4 58 126 - -
Lele07g0366 277 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 56 247 IPR033275 -
Lele07g0366 277 SMART ringv_2 68 117 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0366 Lele-ChrLele07 2049907 2054404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0366 69 116 C3H Transcription Factor Family AT2G37950 42.857 2.75e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2127 13 28053595 28056587 Lele07g0366 07 2049907 2054404 CCT
Lele14g2051 14 26385519 26388638 Lele07g0366 07 2049907 2054404 CCT
Lele15g0284 15 1611901 1614906 Lele07g0366 07 2049907 2054404 CCT
Lele16g0299 16 1657363 1660486 Lele07g0366 07 2049907 2054404 CCT
Lele07g0366 07 2049907 2054404 Lele07g0366 07 2049907 2054404 ECH
Lele05g0347 05 1984574 1990111 Lele07g0366 07 2049907 2054404 hybridization
Lele06g0166 06 1011636 1014189 Lele07g0366 07 2049907 2054404 hybridization