Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0353 ATGTCGAAGCGGAAGTTCGGGTTCGAAGGCTTTGGCATCAACCGTCAATCAACCTATAATTTTGAGAGATCCCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATCACGAGGACACAGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACAATGGCAATGACAGCAAGAACGATGGCAACGGCGACGATATTGATCCCCTGGATGCTTTCATGGAAGGGATTCACGAGGAAATGAGAGCCCCGCCGCCTCCGCAGCCGAAAGAGAAGGCAGAGGACAGGTATAGAGATGATGATGAGGACGACCCGATGGAGAGTTTCTTGCTGGCGAAGAAGGACGCAGGGTTGACCCTGGCGTCCGAGGCTCTGCACGCTGGATATGACTCGGATGAAGAGGTTTATGCAGCTGCGAAAGCTGTGGACGCGGGAATGATAGATTATGACTCTGACGACAACCCCATTCTTGTCGACAAGAAGAAAATTGAGCCTATTCCTGCTCTGGACCACAGTTCCATTGACTACGAGCCATTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGCGAGCAAGATGTTGCTGAATACAGGAAGAGTTGGGCCATTCGTATATCAGGTTTTGATGTTCCAAAGCCAATTAAGACATTTGAGGACTGTGGTTTCTCTCCACAACTTATGAATGCCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAATGCCAAGCTTTACCAGTTGTGCTCTCTGGCACAGATATAATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTTATCTGTGCTCCCACTAGAGAACTGGCGCATCAGATATACCTGGAGGCGAAGAAATTTGCAAAACCCTATGGGTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTAATAGACTTACTGAAAATGAAGGCACTTACAATGATAAGAGCAACTTACTTGGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTTTCTGCGACAATGCCCCGTAAAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCATGTGATTTCTTCTGATACAGAGAAATTGCCATGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGCGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAACTGGCACAAAGAGGCTTTAAAGTGGCAGCTTTGCATGGCGATAAAGATCAAGCTTCCCGAATGGATATCTTACAGAAGTTTAAATCTGGTGCTTACCATGTTCTTATTGCGACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCACGTACATCGCATTGGCAGAACAGGTCGTGCCGGTGACAAAGATGGGACTGCATACACTCTTATAACTGAGAAAGAAGCACGTTTTGCCGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGTCAGAATGTGTCCATGGAGCTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAGGGCAAGGGGAGGGGAGTGGGTGGCGGTAGAGGTGTGCGTGGAGTGGATTATGGTTTGGGTATTGGATACACTCCGGAATCCAATAACCCTTCACCTAGCACAACAAGTCGGTCTGCCGCTGTCAACTCATTGCGGACTGGGATGACGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCATCAAACTCTCAAAACCAAAGCTACGCTAACAGTACAAGTATGCCTGCTAATAAGAGACCCGCTCTCCCTGGCTTCGTATCTGGTGGGTCAATTGGGGGCGATGTAAACACTAATCAGACTCCTGCTTCATCCAGACCTGCTAATTCAGCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGACGCTGGTCAGAGGAATACCTACAGCAGCTCCAGGCCTAGAGAAAGAAGGAGGCCTTCAGGTTGGGACAGATAG 2319 0.4627 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNHEDTDLDNIEYDDNDAPKDGNNGNDSKNDGNGDDIDPLDAFMEGIHEEMRAPPPPQPKEKAEDRYRDDDEDDPMESFLLAKKDAGLTLASEALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPILVDKKKIEPIPALDHSSIDYEPFNKDFYEEKPSISGMSEQDVAEYRKSWAIRISGFDVPKPIKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQALPVVLSGTDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDLLKMKALTMIRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVISSDTEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITEKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGVGGGRGVRGVDYGLGIGYTPESNNPSPSTTSRSAAVNSLRTGMTAQFRSNFVAASSNSQNQSYANSTSMPANKRPALPGFVSGGSIGGDVNTNQTPASSRPANSAVNASSHNSGVDAGQRNTYSSSRPRERRRPSGWDR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0353 772 CDD SF2_C_DEAD 447 579 - -
Lele07g0353 772 MobiDBLite consensus disorder prediction 71 109 - -
Lele07g0353 772 MobiDBLite consensus disorder prediction 652 668 - -
Lele07g0353 772 MobiDBLite consensus disorder prediction 36 64 - -
Lele07g0353 772 CDD DEADc_DDX42 240 436 - -
Lele07g0353 772 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Lele07g0353 772 Gene3D - 191 436 IPR027417 -
Lele07g0353 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 438 IPR027417 -
Lele07g0353 772 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Lele07g0353 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Lele07g0353 772 MobiDBLite consensus disorder prediction 1 113 - -
Lele07g0353 772 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 197 609 - -
Lele07g0353 772 SMART helicmild6 488 569 IPR001650 -
Lele07g0353 772 MobiDBLite consensus disorder prediction 688 705 - -
Lele07g0353 772 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Lele07g0353 772 MobiDBLite consensus disorder prediction 719 757 - -
Lele07g0353 772 SMART ultradead3 248 450 IPR014001 -
Lele07g0353 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Lele07g0353 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Lele07g0353 772 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Lele07g0353 772 MobiDBLite consensus disorder prediction 616 668 - -
Lele07g0353 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Lele07g0353 772 MobiDBLite consensus disorder prediction 13 31 - -
Lele07g0353 772 MobiDBLite consensus disorder prediction 688 772 - -
Lele07g0353 772 MobiDBLite consensus disorder prediction 758 772 - -
Lele07g0353 772 Gene3D - 437 613 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0353 Lele-ChrLele07 1969716 1974576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0353 229 585 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 2.41e-61 211