LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g0330	ATGGATGACTGCTGTGCTGTTTGCGCCGAACCTTTGGAATGGGTTGCGTACGGTCCCTGTTTGCATCGGGAGGTTTGCTCAACCTGCGTAGCTCGTCTCCGTTTCATATGCGACGATCGCCGTTGCTGCATCTGTAAGACCCAGTGCGACCGTGTTTTTGTCACAAAGGCTCTGGGAGATTTTACAAGGATGATTAATAACTTCTCGGTGCTGCCATTAGATGTAAGGGAGGGTCAGGTGGGTTCATACTGGTACCATGAAGATACGAATGCTTTTTTTGATGATGTGGACCACTACAAGATGATCAAGGCTATGTGTAAGCTCTCATGTAGCGTATGTGACAAGATGGAGGAGCAAGCACCTGATGCCTCAAAGCGCCGAGCAAGGTTTCGGAATATAGAACAGCTAAAGGGTCACTTGTTCCGCTTTCACAGGTTGCTCATGTGCAGTTTATGTTTGGAAGGAAGGAAGGTATTCATTTGTGAACAAAAGCTATATACTAGAGCACAGTTAAATCAGCATATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCCGAACCCCATTTTATGGGGACAATGAACTATACACTCATATGTCAACAGAACATTTTACTTGTCATATATGCCAAAGGCAACATCCAGGACACTATGAATATTATAAGAATTATGATGACTTAGAGACCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAAGCTTGCCTTGCTAAAAAGTTCATTGTATTTCAGTCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGAATGTCAAGGTCAAAACGCAATGCTGCTCTTCAGATTCCAACTAGCTTCCGATACAGACACGGTAATCAACAAGATCAACGGCGTGGAAGAGGTCGGACATTTCGTCGTGATCTTTCTGAAAGTGAACTTTCTATGGCTGTTCAAGCCAGTTTTGACACAGCTAGTGCAGAGAGCACTAGTGATGATCCAGCTACATCAAGAAGTGGAGAAGTTGCTCTTGGTTATGGAAACTTTGATAATGAGCCAGGCATCCAATCATCTGAATCCTTAGCTACATCAAGTTCTGAATTGTCTTCAAGATACCTCCAAGCCTTGGGACATTCAAGGAGTTCACCATTGGGAGATTCCTCCTTTCCTCCACTTCCCATAGCATCAATCAATGGCCAAGCAAAGCCCAAAAATGAGCCTGAAGGTTCATCTAGTAACACTATGGCGGCACATTTGCGTCGGCATAGCAACAGAAATGTATCTGCTCAAAGTCAGCATAGCAACAGAAACGTATCTGCTCTTAATTCTGCTAATGGATGGCCAGTTGCAAGTCGTGGATCTGTGCAATCATCAAGTAATCCTATGCAATCTAAAAAGCCAACAAATGTTGCTCCTGGAGTGTCAGGTAATTCCAGTCAGACAAAGACCGCTATAAATCGTGGTCCTGCAACGTCAACCTATGCTAGGTCTGTCCAGGTTACACACAGAACTACTCCTGGGCATTTGTCTCCTGGCACGTCAAGGGAAATACGTGAAAATGGTAGAATCGTTCATTCTGCTTCTGCTCCAAATCTCATTGAAAGGGGTCCTTTGGAAGCTTCATTTCCTGATTTTCCTCCAGTATCTGTTACAAAAGTAAACAAGTTGCCTGCAAGTAGCCAGTCTTTGACAACGACGAATGTGGGGGTTGTTCATTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGTAGTGCTCTTGATTTTGATCAAGATAGATACACCATTTTTAAAGACATTTCTGCACAATATCGCCAAGGAATAATTGATACAGGCACATATTTGGATTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTACTTGAGTTAGCTAGACTGTGCCCTGATCCACAGAAGCAGAAAGAACTTGTTGATTCTTACAATGCCAGTTTGCAAAGAACTGCTTTACAAGAAAATGATTTGGGTGACAGTAGTATCCATCACAAAGATGGCAAAGTCTCCAAGAAAGGTAAAGGTAAAGGTAAAGGGAAGTCTATGGATATTGAAGAGAGGAACTTTAAGGAGAGTGTAGAAGATAGCTTCATAAGCACCGTACGTCAATTACAGTTGAATCATAAACCTGCAGAAGAGAACGCTGAGGTATTATCAAGGGGTGATTACCGTAGTGCCAAAGGTAAGTCGAAAATTTTGGCTGATGAACAACTGATTGGTACAAATTCTCATAGTCTACCCAACCCAAAGCATACTGGGCAGGGTGAAGCATCACTTGGCAGTTTTCCTAACCAAAGTAAAGATGAGGGGTCAGTTGGGAGCAAGCAACGCAAGAAAAGTTGTAAGTTCATTAGAATGCGCCTTGGCGATGGTTCCGTAGAAACGTTGGATCTTAGGAGTTCAAATGCCAACTCAGATCCTGGATCAGAGGCCTTGGATGGTAATAAGAACGATGCTGGAGGACTGCCTGTGCGAGGTGTCTGGCGGAATGGAGGAGGTCATAAACTCTTTTCTTAG	2562	0.436	MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTQCDRVFVTKALGDFTRMINNFSVLPLDVREGQVGSYWYHEDTNAFFDDVDHYKMIKAMCKLSCSVCDKMEEQAPDASKRRARFRNIEQLKGHLFRFHRLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHFTCHICQRQHPGHYEYYKNYDDLETHFRQEHFLCEDEACLAKKFIVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNQQDQRRGRGRTFRRDLSESELSMAVQASFDTASAESTSDDPATSRSGEVALGYGNFDNEPGIQSSESLATSSSELSSRYLQALGHSRSSPLGDSSFPPLPIASINGQAKPKNEPEGSSSNTMAAHLRRHSNRNVSAQSQHSNRNVSALNSANGWPVASRGSVQSSSNPMQSKKPTNVAPGVSGNSSQTKTAINRGPATSTYARSVQVTHRTTPGHLSPGTSREIRENGRIVHSASAPNLIERGPLEASFPDFPPVSVTKVNKLPASSQSLTTTNVGVVHSANKSLVEKIRSALDFDQDRYTIFKDISAQYRQGIIDTGTYLDYVQQFGLSHLVLELARLCPDPQKQKELVDSYNASLQRTALQENDLGDSSIHHKDGKVSKKGKGKGKGKSMDIEERNFKESVEDSFISTVRQLQLNHKPAEENAEVLSRGDYRSAKGKSKILADEQLIGTNSHSLPNPKHTGQGEASLGSFPNQSKDEGSVGSKQRKKSCKFIRMRLGDGSVETLDLRSSNANSDPGSEALDGNKNDAGGLPVRGVWRNGGGHKLFS	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	669	701	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	415	523	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	809	853	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	299	375	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	389	533	-	-
	Lele07g0330	853	ProSiteProfiles	Zinc finger RING-type profile.	5	46	IPR001841	-
	Lele07g0330	853	SMART	c2h2final6	220	250	IPR013087	-
	Lele07g0330	853	SMART	c2h2final6	251	280	IPR013087	-
	Lele07g0330	853	SMART	c2h2final6	196	219	IPR013087	-
	Lele07g0330	853	SMART	c2h2final6	108	144	IPR013087	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	326	349	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	756	794	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	756	785	-	-
	Lele07g0330	853	PANTHER	ZINC FINGER PROTEIN 598	1	759	IPR044288	GO:0061630\|GO:0072344
	Lele07g0330	853	CDD	RING-HC_ZNF598	5	46	IPR041888	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	810	826	-	-
	Lele07g0330	853	MobiDBLite	consensus disorder prediction	304	322	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g0330	Lele-ChrLele07	1823257	1828352	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g0330	1	853	C2H2 Transcription Factor Family	AT3G62240	52.050	0.0	811

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g0330	07	1823257	1828352	Lele07g0330	07	1823257	1828352	ECH
	Lele05g0310	05	1759414	1763741	Lele07g0330	07	1823257	1828352	hybridization
	Lele06g0128	06	786744	791780	Lele07g0330	07	1823257	1828352	hybridization