Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0310 ATGGGGAAAGCCTCTAGCTCTTCTTCTTCCTCTATCAGCAGCAACAACCACCCACTCATCTCCACCGCTTCATCTCTCACCCGCCTCCATAGCTCTGACTTTCCTACAGATCTCAGGCTTGGTCTTAGCATTTCTGCAACTCAACATGTTGGCTCTTCTGTTTCAAGGGGGCAAGCAACGGATTGGATCCCAAACCAGCGAGCTCATCATGCGGCAGAAGTAAATGATTGTGGCGATCATAGCAGCTTGTTTGTAAAGGTGTACATGGAAGGAATTCCAATAGGCAGAAAACTCAATCTGGTAGCTCACGATGGCTACCATGAGTTAGTGAGGACTCTGGAAAACATGGGGCACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTCGGCGATGTTCCATGGGAGATGTTCCTATCAACAGCGAAGAGATTGAAGATAACGAGGGTAGACTCATTCGGGTGTTAGGCAATTTCAGGAATGACAGTGCAGTCTCTGGATTTGGTGGTTTTCCAATTTTGTCCTTATAG 570 0.4789 MGKASSSSSSSISSNNHPLISTASSLTRLHSSDFPTDLRLGLSISATQHVGSSVSRGQATDWIPNQRAHHAAEVNDCGDHSSLFVKVYMEGIPIGRKLNLVAHDGYHELVRTLENMGHRDGWGATREVPCANIRRRRRRFGDGRRCSMGDVPINSEEIEDNEGRLIRVLGNFRNDSAVSGFGGFPILSL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0310 189 Pfam AUX/IAA family 69 117 IPR033389 -
Lele07g0310 189 Gene3D - 77 157 - -
Lele07g0310 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 119 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0310 Lele-ChrLele07 1708888 1709786 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele07g0310 AUX_IAA 5.4e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0292 05 1646232 1647131 Lele07g0310 07 1708888 1709786 hybridization
Lele06g0107 06 663802 670523 Lele07g0310 07 1708888 1709786 hybridization