Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0281 ATGTCTGCTTTTGGTGAGGACATCCCTAATGTTGGTGATACAGATCGGTATGGTTGCCGAGGGGGTGATGGCAATAACGATGATGACGATGATGGGAAACCTGCCAGGGATGAAGATGGCAAGAAGGGGCACACAAAACATGGATTTGGAAAAGATATTGAAAAGGCGAAGCAAGTGGTCCTGCATCAATTCTCGAAAGCCAAGAAACAACTCCACAATAGAAGGCACAAAAGAGCTCTTCATAAATCTTCTGGGGCTGGAGCTGCTATTGTAAGCAGAGCTTCAGGTAAGACGATTCGTGGTGCTTCTGGTGCAGGATGCTACTTTTGTTTTTCGCGCCCTCAAGTTGTGGAATCACCTAATGGGTCCCCGTCAAGCGACCCTAATGCTCCAAGTTTCACTTATGCAATGTTGAAAACTTTAATGGAGAAGAATGATTTCTATTCCAGAGAATGCAATCCCCACGTTATGGTCTGGAAAGGACTTGATGTTACCTGGATGCTCGATCACTTGCAGGTTAATATGCAGAGAGAGAAACAAACAGTTATTTCAGCTCTATCCTCCTTTCCACTCATTGACACATATGAATCAGATTCGAGACTACTTCCTAGATTTGCTAACGCATTAATGCACGCTTCGTCTCAAGGTTTCCTCTTCATTGGTTGGGCGAATTTGACCTGGTTTCTTCTCGCTGTTGCTTCTCCAGGTGTAACGAAGGCGAAAATGTCCTCCTCAAGACCTAGCCAGTCATCCAGTAACTCGGGAAGATCAAGACATACTGCTCGAATTATTGCTCAGACCACTGTAGATGCAAAACTACATGCAAATTTTGAGGAGTCTGGTACCTCTTTTGACTACTCAAACTCGGTGCGTATCTCTGGTACAGTAAATGGAGAGCAGCAACCAAGATCTAACCGGGTGACTACAGCTTACCTCCATCACATACAGAAAGGAAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAGGTGATTGCATACAGTGAGAATGCTCCTGAAATGTTGACCATGGTTAGTCATGCTGTACCTAGTGTAGGTGACAACCCTGCCCTTGGCATTGGCACCGACATAAGAACCATATTCACTGCCCCAAGTGCTTCTGCGTTGCAGAAAGCATTAGGATTTGGGGAAGTTTCACTTCTCAACCCTATTCTAGTCCATTGCAAAACCTCTGGAAAGCCCTTTTACGCAATTATCCATCGTGTGACTGGAAGCTTGATAATTGATTTCGAGCCAGTCAAGCCTTTTGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCTTACAAGCTTGCTGCCAAGGCAATCACTAGATTGCAATCTCTGCCAAGCGGTAGTATGGAAAGGCTATGTGATACGATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGATGATGATCATGGGGAAGTAATTTCTGAGATCACAAAGCCAGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGATATTCCACAGGCTGCACGGTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTAGATTGTTGTGCAAGGCATGTGAAGGTGCTTCAAGATGAAAAACTTCCATTTGAGTTAACCTTGTGTGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCCCTGGTTATGGCAGTGGTGGTCAATGACAGTGATGAAGATGTGGACAGCTCTGATTCTATACAGCAGCAGAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGCCATAACACTACACCAAGGTTTGTTCCTTTTCCTCTTCGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCTATCCATGTGAATAAAGAATTAGAGTTAGAATACCAGATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACCCCTAGGTATTATATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGAGACTAGGAGTAACACCAAGTGAATCCCAGATCCGAGATATATCTATATGGCTCTCTAAGAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCAGGTGCTCTTGCTCTTGGTGATATAGTATGTGGGATGGCAGCTGTGAGAATATCTACAAAAGATATGGTTTTCTGGTTTAGATCGCATACTGCTGCAGAAATTCGATGGGGTGGTGCGAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCGAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAGTTAATCCTGAGGAACGCATTTAAAGATACAGAGAGTATTTATGTAACCACCAATGCAATTAACACAAGATTGAGCGATTTGAAGATTGAAGGGATGCAGGAATTGGAGGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACGGCAACAGTGCCAATATTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGTCTTCCAGTTGAGGAAGCAATCGGGAAGCATCTGCTCACACTAGTTGAGGATTCTTCAACTGATAGGGTCAAGAAGATGCTGGACATGGCACTGCAAGGTGAAGAAGAGCAGAATGTCCAATTTGAGATCAAAACACATGCATCTAAGATTGATTCTGGTCCCATCAGGTTGGTTGTTAATGCTTGTGCAAGTAGAGACCTTCGAGACAACGTAGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCAATTGTCCAGAATCCAAATCCATTGATACCCCCAATTTTTGGTTCAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCTGCAATGATCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTCTTAGGGGAGGTCTTTGGAACTCATGCAGCTTGTTGCCGTTTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAATTGCACTTAATAAAGCCATGACCGGTTTGGAAACTGAGAAGGTTGCTTTTGGCTTTTTTTCTCGGAATGGGAAGTTTGTAGAGTGCCTGCTTTCTGTGAGTAAGAAGTTGGACATAGAGGGGACGGTTACAGGGCTTTTCTGCTTCTTGCAGTTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTACATGAAAAGGCAGATACGGAATCCTGTAAGTGGGATTGTGTTCTCCCGTAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGCCAGATCAGCAAAGTTCTTGATGATTCTGATCTTGACAGCATCATTGATGGGTACTTAGATCTGGAGATGGTTGAATTTACTCTGCACGAAGTATTGGTTGCCTCTCTCAGTCAAGTAATGACAAAGAGCAATGCAAAGGGTATCAGAATAGTGAATGAGGTGGAAGAGCAGATCACGACAGAAACCTTGTATGGTGACAGTCTCAGGCTTCAACAGGTCTTAGCTGACTTCTTATTGATGTCCGTCACTTTTACACCCTCTGGAGGTAAGGTGGTTGTTGCGGCCTCTTTAACCAAAGATCAGTTGGGACAATCCGTCCATCTTGCCAAATTGGAGTTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTGCTAAACCAGATGTTTGGAAGTGATGTACAAGAATCTGAAGAAGGTGTTAGCCTGCTTATTAGTAGAAAACTGGTAAAGCTGATGAACGGAGATGTCCGTTATATAAGGGAAGCAGGCAAATCATCCATCATTTTAACTGTTGAACTCGCTGCAGCCCACAAATCAGGGGATTAA 4098 0.4375 MSAFGEDIPNVGDTDRYGCRGGDGNNDDDDDGKPARDEDGKKGHTKHGFGKDIEKAKQVVLHQFSKAKKQLHNRRHKRALHKSSGAGAAIVSRASGKTIRGASGAGCYFCFSRPQVVESPNGSPSSDPNAPSFTYAMLKTLMEKNDFYSRECNPHVMVWKGLDVTWMLDHLQVNMQREKQTVISALSSFPLIDTYESDSRLLPRFANALMHASSQGFLFIGWANLTWFLLAVASPGVTKAKMSSSRPSQSSSNSGRSRHTARIIAQTTVDAKLHANFEESGTSFDYSNSVRISGTVNGEQQPRSNRVTTAYLHHIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDNPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCCARHVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDVDSSDSIQQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIRDISIWLSKNHMDSTGLSTDSLAEAGLPGALALGDIVCGMAAVRISTKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESIYVTTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVEEAIGKHLLTLVEDSSTDRVKKMLDMALQGEEEQNVQFEIKTHASKIDSGPIRLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEVFGTHAACCRLKNQEAFVNFGIALNKAMTGLETEKVAFGFFSRNGKFVECLLSVSKKLDIEGTVTGLFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPVSGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQISKVLDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVMTKSNAKGIRIVNEVEEQITTETLYGDSLRLQQVLADFLLMSVTFTPSGGKVVVAASLTKDQLGQSVHLAKLEFSITHAGSGIPEALLNQMFGSDVQESEEGVSLLISRKLVKLMNGDVRYIREAGKSSIILTVELAAAHKSGD 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0281 1365 SMART HisKA_10 1135 1196 IPR003661 GO:0000155|GO:0007165
Lele07g0281 1365 PANTHER TWO-COMPONENT HISTIDINE KINASE 1138 1342 - -
Lele07g0281 1365 FunFam Phytochrome 647 778 - -
Lele07g0281 1365 ProSitePatterns Phytochrome chromophore attachment site signature. 559 568 IPR013516 -
Lele07g0281 1365 CDD HATPase_Phy-like 1246 1357 IPR044767 -
Lele07g0281 1365 Pfam Phytochrome region 655 830 IPR013515 GO:0006355|GO:0009584
Lele07g0281 1365 SUPERFAMILY PYP-like sensor domain (PAS domain) 315 427 IPR035965 -
Lele07g0281 1365 MobiDBLite consensus disorder prediction 20 53 - -
Lele07g0281 1365 TIGRFAM sensory_box: PAS domain S-box protein 865 981 IPR000014 -
Lele07g0281 1365 ProSiteProfiles PAS repeat profile. 991 1043 IPR000014 -
Lele07g0281 1365 Gene3D PAS domain 315 562 - -
Lele07g0281 1365 Gene3D PAS domain 852 989 - -
Lele07g0281 1365 Pfam PAS fold 310 426 IPR013654 GO:0006355
Lele07g0281 1365 MobiDBLite consensus disorder prediction 1 53 - -
Lele07g0281 1365 Pfam GAF domain 459 642 IPR003018 GO:0005515
Lele07g0281 1365 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1197 1351 IPR036890 -
Lele07g0281 1365 Gene3D - 440 803 IPR029016 -
Lele07g0281 1365 SMART HKATPase_4 1247 1359 IPR003594 -
Lele07g0281 1365 CDD PAS 1002 1113 IPR000014 -
Lele07g0281 1365 ProSiteProfiles PAC domain profile. 931 987 IPR000700 -
Lele07g0281 1365 CDD PAS 869 975 IPR000014 -
Lele07g0281 1365 SMART gaf_1 459 652 IPR003018 GO:0005515
Lele07g0281 1365 ProSiteProfiles PAS repeat profile. 858 928 IPR000014 -
Lele07g0281 1365 FunFam Phytochrome 854 985 - -
Lele07g0281 1365 Pfam PAS fold 991 1113 IPR013767 GO:0006355
Lele07g0281 1365 Pfam PAS fold 861 975 IPR013767 GO:0006355
Lele07g0281 1365 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1247 1356 IPR003594 -
Lele07g0281 1365 Gene3D PAS domain 1005 1116 - -
Lele07g0281 1365 SUPERFAMILY GAF domain-like 439 639 - -
Lele07g0281 1365 MobiDBLite consensus disorder prediction 240 259 - -
Lele07g0281 1365 Gene3D - 1198 1362 IPR036890 -
Lele07g0281 1365 PRINTS Phytochrome signature 861 877 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 953 970 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 374 396 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 474 493 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 973 993 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 880 895 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 559 580 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 790 808 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 757 776 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 PRINTS Phytochrome signature 672 692 IPR001294 GO:0006355|GO:0009584
Lele07g0281 1365 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 459 632 IPR016132 -
Lele07g0281 1365 SUPERFAMILY PYP-like sensor domain (PAS domain) 864 971 IPR035965 -
Lele07g0281 1365 Coils Coil 639 659 - -
Lele07g0281 1365 SUPERFAMILY GAF domain-like 650 828 - -
Lele07g0281 1365 Gene3D - 647 820 IPR043150 -
Lele07g0281 1365 ProSiteProfiles Histidine kinase domain profile. 1142 1361 IPR005467 -
Lele07g0281 1365 SMART pas_2 860 926 IPR000014 -
Lele07g0281 1365 SMART pas_2 990 1059 IPR000014 -
Lele07g0281 1365 SUPERFAMILY PYP-like sensor domain (PAS domain) 1005 1110 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0281 Lele-ChrLele07 1530619 1540361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0281 242 1362 Histidine Kinase Gene Family AT1G09570 80.214 0.0 1893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0281 07 1530619 1540361 Lele07g0281 07 1530619 1540361 ECH
Lele05g0263 05 1481123 1485659 Lele07g0281 07 1530619 1540361 hybridization
Lele06g0081 06 519832 524190 Lele07g0281 07 1530619 1540361 hybridization