Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0277 ATGGGTATAAAGGGTTTAACAAAGCTTTTAGCGGACAATGCTCCAAAATCAATGAAAGAGCATAAATTTGAGAGCTATTTTGGCCGCAAAATTGCCATTGACGCCAGTATGAGCATCTACCAATTCCTAATTGTCGTGGGGAGAAGTGGGACTGAGATGCTCACCAATGAGGCTGGTGAAGTTACAAGTCATTTGCAAGGCATGTTTTCACGAACTATCAGACTTCTAGAAGCCGGAATAAAGCCAGTATATGTTTTTGATGGGAAGCCTCCGGAATTGAAGAAACAAGAGCTGGGCAAACGTTTCTCGAAGAGGGCTGATGCTGGTGAGGATTTGTCTGAAGCCTTGGAGACTGGCAATAAGGAAGACATTGAGAAATTCAGTAAACGGACTGTGAAGGTGACAAAGCAACATAATGAAGACTGCAAAAGGCTTTTAAGACTCATGGGAGTGCCTGTGGTTGAGGCTCCCTCAGAAGCAGAAGCACAATGTGCTGCACTTTGCAAGTCAGGAAAGGTTTATGCAGTAGCTTCTGAAGACATGGATTCATTGACATTTGGAGCTCCTAAATTTCTTAGGCATTTGATGGATCCTAGCTCCAAGAAAATCCCAGTCATGGAATTTGAAGTTGTAAAGATTTTGGAGGAACTAAATCTTACCTTGGATCAATTCATTGACTTGTGCATTCTTTCTGGGTGTGATTACTGTGATAGTATTCGAGGGATTGGGGGGCTGACTGCCTTGAAACTCATACGCCAACATGGCTCTATAGAGAATATACTGGAGAACATAAACAAAGAGAGGTACCAAATACCAGATGATTGGCCATATAAGGAGGCTCGGCAACTTTTTAAAGAACCGTCAGTCTTAACTGAAGAAGGGCAACTTGACCTTAAGTGGACTGCTCCAGATGAAGATGGGTTAATTACATTTTTGGTAAATGAGAATGGTTTCAATGCTGACAGGGTCACAAAGGCGATAGAAAAGATTAAATCAGCAAAGAACAAGTCATCGCAAGGACGGTTGGAATCCTTTTTCAAGCCTGCAGTGAATCCATCTGCACCCATTAAACGGAAGGAAACACCAGCAAATACTGCTAAGGAGACTAACAAAAAGGCCAAGGGTGGTGGTGGGAAGAAGAAGTAG 1146 0.4267 MGIKGLTKLLADNAPKSMKEHKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPELKKQELGKRFSKRADAGEDLSEALETGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVVKILEELNLTLDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENINKERYQIPDDWPYKEARQLFKEPSVLTEEGQLDLKWTAPDEDGLITFLVNENGFNADRVTKAIEKIKSAKNKSSQGRLESFFKPAVNPSAPIKRKETPANTAKETNKKAKGGGGKKK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0277 381 SMART xpgineu 147 219 IPR006086 GO:0004518
Lele07g0277 381 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 349 IPR036279 -
Lele07g0277 381 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Lele07g0277 381 Gene3D - 10 222 - -
Lele07g0277 381 SMART xpgn3 1 108 IPR006085 GO:0004518
Lele07g0277 381 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lele07g0277 381 SMART 53exo3 29 310 IPR002421 GO:0003677
Lele07g0277 381 MobiDBLite consensus disorder prediction 335 381 - -
Lele07g0277 381 FunFam Flap endonuclease 1 219 286 - -
Lele07g0277 381 Gene3D - 223 286 - -
Lele07g0277 381 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 -
Lele07g0277 381 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lele07g0277 381 CDD H3TH_FEN1-Euk 222 290 - -
Lele07g0277 381 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Lele07g0277 381 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lele07g0277 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lele07g0277 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lele07g0277 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lele07g0277 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lele07g0277 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lele07g0277 381 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lele07g0277 381 FunFam Flap endonuclease 1 10 222 - -
Lele07g0277 381 CDD PIN_FEN1 4 331 - -
Lele07g0277 381 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0277 Lele-ChrLele07 1518225 1521679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0277 1 361 Core DNA Replication Machinery Family AT5G26680 86.704 0.0 663