LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g0233	ATGGCATCTTTGCAGCCCGACTTAGATCCTATTCATTCCGATTCGTTGCCGCGATCCCGTCTTAAAGAGCGCACCGATTTTGGGTCCGATTCTAACCACCACAATTCTCTCCACCCCGTTCGATGGAGATCCGACCCGGAGCGTCGGATCTACTCCTTCAAGCTCGTCGATGCTCTGCGCCACGTCCTCCGTCGCAGTCCTTCTCTCCCGGCCAAACCTAGCAGCGGTCGTGAAATTCGTGAGACGGCAGATAGAGTTCTAGCCGCGACGGCCAAGGGCAGAACTCGATGGAGTCGAGCGATTCTGGCTTCTCCGCTCGGCCGTTGGAGATTTCAGAGGCAACACAAGAAGGTGAAGATGACAAGAGGACTGAAGAAACCGGAAATTAGGAAAGAGGGAAGGAGGTTAACGGCTCTGCAGAAGAAAGCGCGCGTTCTCGGCCGATTAGTTCCTGGTTGCCGTAAGGTCTCCTTTCCGAATCTTCTGGAAGAAGCCACTGATTATATATCGGCATTGGAGATGCAAGTTCGAGCCATGACGGCACTCACCGAATTGCTCGCCGTTGGTGGCGCGCCGGCCGATCGACACGAGGGGCCTCGACTGTAA	606	0.5528	MASLQPDLDPIHSDSLPRSRLKERTDFGSDSNHHNSLHPVRWRSDPERRIYSFKLVDALRHVLRRSPSLPAKPSSGREIRETADRVLAATAKGRTRWSRAILASPLGRWRFQRQHKKVKMTRGLKKPEIRKEGRRLTALQKKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALTELLAVGGAPADRHEGPRL	201

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g0233	201	CDD	bHLH_AtIBH1_like	130	183	IPR044549	GO:0006355
	Lele07g0233	201	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	123	172	IPR011598	GO:0046983
	Lele07g0233	201	MobiDBLite	consensus disorder prediction	13	39	-	-
	Lele07g0233	201	MobiDBLite	consensus disorder prediction	1	39	-	-
	Lele07g0233	201	PANTHER	TRANSCRIPTION FACTOR IBH1-LIKE 1	44	186	IPR044660	GO:0006355
	Lele07g0233	201	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	129	189	IPR036638	GO:0046983

Showing 1 to 6 of 6 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g0233	Lele-ChrLele07	1290358	1290963	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g0233	1	179	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09250	45.213	5.21e-39	131

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g0233	07	1290358	1290963	Lele08g0038	08	260834	264558	ECH
	Lele07g0233	07	1290358	1290963	Lele07g0233	07	1290358	1290963	ECH
	Lele05g0227	05	1270686	1271294	Lele07g0233	07	1290358	1290963	hybridization
	Lele06g0038	06	284710	285297	Lele07g0233	07	1290358	1290963	hybridization

Showing 1 to 4 of 4 entries