Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0213 ATGGCTATTTTGGTAATTATGGAGCGAGACCTGCAAGAGGTCGCGGAGATGCGGACGCCATTTGAACGTTCTCACAACTATAGCTCAATCTTTTTCCCTTCCAAAGATTCCCACTTCAACTCTATATTGTCTCAGATGGTAAGGGGGGGAAAGTTTGGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGCTCTGATGATTCGGATGAGGACTATGTGGTTCCAGACGAAGGTAGAGATTTGTCTGATTGTTCGGAGGATTCATTGTCTTCTTTAGATGGATGTGCATCCGAGGAGAGTTTTGGTAGCTTTGTAGAGGATGAGGAGGAAATTGAAGGAAGGAGGAAATTCAATAGATCCAAGTCAAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAACAGAGAGGAAGGATAGCTTATTCACATCAACTAGAAGAAGATAAGGAAGAAGAACGAGAACAAGAAGAGGAAGATTATGAAGATACAGATGAATATGAGGAAGATGATGCCAATGAAGATTTTGATTGTGATGAGGATGAGGAATTTACAGCCGAGGAAGAAGATTACTCAGATGAGGAAGAAATAAAGGGGAGACAGAAGGAAAGTAGTGGCATAAAAATGGGCAAGAAGGTTGCGCAGAAGTGGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGAAAGAATTCTAGAGCCGCAAGGAAGCCCTCGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAACTTGAGGAGGAAAGCAAATTATGATAATGATGATGAGGGTGATTTTATAGATAACAGTCCTACCATCAGAACCAAGAGTAAGAAAAAACCAGGACGAAAAAGGAGAAGACTAATCGTTGATTCAGATTCGTACTCAGATTGTGTGTCATCTAGATCATCTGATTATGGGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGTTTGAGAATTAATTTGAGGAGTTCATCCCTTTCGAAAAAAAATGAAGAGGATGGAGTCCATGAAGATCTACATCAGCAAAGAAAGCCTCCAGCCCGCAAAGGTAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAGCCAGGAAAGCAGGTGTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACACTTTTTTTGTTTTGCTTGCATTATGGAATGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATTATTAAGCCTGCGCGATCAACAACAGCGGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGACCTCATGTTACTGTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGGGAGGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAGTTCAGGAAGGAGTGGCTGATTCAAGGGCAACAACAGTTCAGAGCCTACCTGGTAGACCATCCCCTGCTGTACGTGCAAGAGAAATTATTGACCTCAACTTGGTGTCCTCACCGCGTGCAGCTTTAAGTCAAGGGTTGGGGAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCCCCAGTGTCTGGAGGAGGGGCACCAACTTTATCCGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTGCTGGTCGATCTAATGGCATTTCAGCTACCAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCAAAGTAGGGTAACAACCGCTCAAGACACAAGGACACAGAATGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTATGCAACAGTACCTCCACACTAATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAATGCCAGTAGTTCAAGATTCAACTCCATGTACCAACAGAGCTGTGAATGGGGCATTTTGGCCTGGTCTTGTGGGGACGCCTCCTGTATCAGATTATGAACAAGTCCATCAGCTTAGCAGCAGTTCGCACATTGTTGCTGATGGTACCATGTCCCCTGCTATTAGAGAAGAGAGTAACTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCATCTTATGGGCTTGTCACAAAATATTGATTTAGGCAACAGTACCATCAAGGACATTGTAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCCTGTCCCCACATTGAACTGATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGACGTGGTTAAGAGGACCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2634 0.4336 MAILVIMERDLQEVAEMRTPFERSHNYSSIFFPSKDSHFNSILSQMVRGGKFGGKRNFRKRVRSKEGGSDDSDEDYVVPDEGRDLSDCSEDSLSSLDGCASEESFGSFVEDEEEIEGRRKFNRSKSKNGICGRQKIGRKPSQQRGRIAYSHQLEEDKEEEREQEEEDYEDTDEYEEDDANEDFDCDEDEEFTAEEEDYSDEEEIKGRQKESSGIKMGKKVAQKWASVTYTRGRKRRKNSRAARKPSRKKRRKNGGLNLRRKANYDNDDEGDFIDNSPTIRTKSKKKPGRKRRRLIVDSDSYSDCVSSRSSDYGYTISEEEREQVREAEELCGSLRINLRSSSLSKKNEEDGVHEDLHQQRKPPARKGKEKIEEHQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTIIKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADSRATTVQSLPGRPSPAVRAREIIDLNLVSSPRAALSQGLGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSAAGRSNGISATNSTSNLYGSQNDQSRVTTAQDTRTQNVGTSSYHSFFEERLCNSTSTLMQNGDHFSMRISNSRMPVVQDSTPCTNRAVNGAFWPGLVGTPPVSDYEQVHQLSSSSHIVADGTMSPAIREESNFHIVKEQLSSLVKRHLMGLSQNIDLGNSTIKDIVRISLNTILAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRTMDTRMSQWLRLGL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0213 877 MobiDBLite consensus disorder prediction 58 319 - -
Lele07g0213 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 456 IPR013083 -
Lele07g0213 877 ProSiteProfiles Zinc finger PHD-type profile. 486 535 IPR019787 -
Lele07g0213 877 MobiDBLite consensus disorder prediction 637 672 - -
Lele07g0213 877 CDD RING-HC_Topors 395 437 - -
Lele07g0213 877 Coils Coil 317 337 - -
Lele07g0213 877 MobiDBLite consensus disorder prediction 342 385 - -
Lele07g0213 877 Pfam PHD-finger 488 534 IPR019787 -
Lele07g0213 877 SUPERFAMILY FYVE/PHD zinc finger 458 534 IPR011011 -
Lele07g0213 877 SUPERFAMILY RING/U-box 394 443 - -
Lele07g0213 877 Coils Coil 146 174 - -
Lele07g0213 877 MobiDBLite consensus disorder prediction 158 201 - -
Lele07g0213 877 SMART ring_2 395 436 IPR001841 -
Lele07g0213 877 MobiDBLite consensus disorder prediction 261 281 - -
Lele07g0213 877 PANTHER F18C1.6 PROTEIN 46 868 - -
Lele07g0213 877 SMART PHD_3 488 533 IPR001965 -
Lele07g0213 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 536 IPR013083 -
Lele07g0213 877 MobiDBLite consensus disorder prediction 229 257 - -
Lele07g0213 877 ProSitePatterns Zinc finger RING-type signature. 414 423 IPR017907 -
Lele07g0213 877 ProSiteProfiles Zinc finger RING-type profile. 395 437 IPR001841 -
Lele07g0213 877 Pfam Ring finger domain 394 437 IPR001841 -
Lele07g0213 877 MobiDBLite consensus disorder prediction 202 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0213 Lele-ChrLele07 1153651 1157333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0213 483 532 C2H2 Transcription Factor Family AT3G01460 48.077 5.16e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele07g0213 PHD 5.8e-09 CL0390