Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0190 ATGAGTCGCCGGTCCAGTCGCACCATCTATGTTGGCAATCTTCCTGGCGATATTCGCTTGAAAGAAGTAGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTCGAGTTTGAAGATCCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATATAATTTTGATGGTTTTCGTCTGCGGGTTGAGCTGGCACATGGTGGGCGGGGATCTTCATCATCAGCAGACCGCTACAGTAGTTATAGCTCTAGAGGTGGTAGCAATGGTGTTTCCAGGCGCTCTGACTATCGCGTTATGGTCACTGGATTACCTCGTTCAGCTTCTTGGCAAGACTTGAAGGATCACATGCGTAGAGCTGGTGATGTGTGTTTCTCTCAAGTCTTCCGTGCACGTGGTGGCATGACTGGGATAGTGGATTATACAAACTATGATGATATGAAATATGCTATTAGGAAGCTTGATGACTCAGAATTCCGTAATGCTTTCTCTCGTGCATATATACGGGTGAGGGAATATGATCGGCGGAGTTATACAAGGAGTCCTAGCTGTGATTCAAGGAGAAGCTATTCTAGAAGTCGAAGTCGCAGCCGCAGTCCTGACATGATGCGAAGTCGAAGTCCTAGCTACAGTGACAGGAGCCGAAGCTTGTCTCCAAAGGCAAAACGTTCCAGGCGATCATTATCAAGATCTTGGTCAAGATCCAGGTCACCAAATTCAACTTCTCCACCTCGCAAGAGTCGCAGTCCTAGAAGCTTGTCAAAATCTAGTTCACCTTCGGTGAGATCTGAGCGTAGCAGATCTGTTGAATCTGGAGATCGTTGA 867 0.4602 MSRRSSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGRGSSSSADRYSSYSSRGGSNGVSRRSDYRVMVTGLPRSASWQDLKDHMRRAGDVCFSQVFRARGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYTRSPSCDSRRSYSRSRSRSRSPDMMRSRSPSYSDRSRSLSPKAKRSRRSLSRSWSRSRSPNSTSPPRKSRSPRSLSKSSSPSVRSERSRSVESGDR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0190 288 MobiDBLite consensus disorder prediction 87 105 - -
Lele07g0190 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lele07g0190 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Lele07g0190 288 MobiDBLite consensus disorder prediction 189 215 - -
Lele07g0190 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lele07g0190 288 MobiDBLite consensus disorder prediction 82 107 - -
Lele07g0190 288 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Lele07g0190 288 CDD RRM1_SF2_plant_like 8 79 - -
Lele07g0190 288 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Lele07g0190 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lele07g0190 288 SMART rrm1_1 112 181 IPR000504 GO:0003723
Lele07g0190 288 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lele07g0190 288 MobiDBLite consensus disorder prediction 245 279 - -
Lele07g0190 288 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Lele07g0190 288 CDD RRM2_SF2_plant_like 111 186 - -
Lele07g0190 288 MobiDBLite consensus disorder prediction 189 288 - -
Lele07g0190 288 Gene3D - 2 110 IPR012677 -
Lele07g0190 288 Gene3D - 111 188 IPR012677 -
Lele07g0190 288 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0190 Lele-ChrLele07 1012669 1016675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0190 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 1.74e-06 47.0