Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0175 ATGTCGAACAACACAAGCGGCGACAGTGGAAGCTTCTCGACAGAGAACGCCGGAGAAGGAGGCGCCAAACGGCCGGCGGAGATACTCGGTCAGTTTCACAGCCCAAATTCTCTTACTTCAACGACGACAACTAATAGCAATGTTTCCAACACACCTCCACCTCCTAAGAAGAAGAGAAACCTACCCGGAAATCCAGATCCAAGCGCTGAGGTGATAGCTCTATCGCCAAACACCCTAATGGCCACAAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGAAGCACCACAGATGTTCGAAAGAGGGTCTATATTTGTCCTGAACCATCGTGTGTACACCACAACCCAGCCCGAGCACTGGGTGATCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCTCACTCTAAGATCTGTGGAACCAGGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGGAGAGATAGCTTCATCACCCATAGAGCTTTCTGTGGAGCACTGACTGAGGAGAATAACAAAGCCAACGAAAGACAAACAATGCCAGGAATGAGCCCGCCGAGCTTTCGGGCGGGGCATCAAATTCAGAACCTGGTTTCTTCATTACCAGTGAATAATGCCAATAATATGCCGAACCCACGAGCTGGGAATATGGATAACAACAACAACAACAATCATCCAATGTCGTCACTGCTTCAGGAGCTCATGCCAATGCCTGCAAACAAACCCTTTAACCATAGTTTGAATGCAGGAAATCTATTCACGAGAAGCCTCTCTTCTACTTCCTCAGCACCTCCTCTTAAACTAAATTCAAATTCGCCCAACGTCTTCGAAGGAAATGGGCAGCACCAACTACCGCTACCAGCCGCCGCCGCCGCCGCTTCCTCACAGCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCCCAAATGGGGGCAACTGTGAGCAACTCGTCGTCCATGGCAGAAAAGGGCTTTGTGACGAGCATGGCGCCTCCGTCATATGGTCCAAACGGCGGGCTTTCCTTCATGAACCACTATATGCAGAATGGGCAAGACGATCATATCTCCGGCCAGTATTTAAGTGCGACCGGGAGCATGGGAATGAACGGCGTGGATATGTTTAACGCTATCATGGACCAAAGCAAAGCTTTCTCGAAGATCATAGAGGAGAATAACCGAAGCAATAATGGAGTTTTGCATGGTGGGGCAAGTGGTGGGGCTATTAAGGGAAGCGGGGATATGCTGACTCTGGACTTCATGGGAATCGGAGGAGGAGGAGGAGGAGTTGGACATGGAAGTTTCTTCGGGAACCAACACCAACCGCCCGGTGACAAGGGCGCAATTAGAGGAGATGAGATCTGGAGAAATTGGTCGATCAAGAATGCAGGATTTGAATCATTCTCAGCAACAAGCAGCATCAACTGA 1560 0.4949 MSNNTSGDSGSFSTENAGEGGAKRPAEILGQFHSPNSLTSTTTTNSNVSNTPPPPKKKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTTDVRKRVYICPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCGALTEENNKANERQTMPGMSPPSFRAGHQIQNLVSSLPVNNANNMPNPRAGNMDNNNNNNHPMSSLLQELMPMPANKPFNHSLNAGNLFTRSLSSTSSAPPLKLNSNSPNVFEGNGQHQLPLPAAAAAASSQLMSATALLQKAAQMGATVSNSSSMAEKGFVTSMAPPSYGPNGGLSFMNHYMQNGQDDHISGQYLSATGSMGMNGVDMFNAIMDQSKAFSKIIEENNRSNNGVLHGGASGGAIKGSGDMLTLDFMGIGGGGGGVGHGSFFGNQHQPPGDKGAIRGDEIWRNWSIKNAGFESFSATSSIN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0175 519 Gene3D Classic Zinc Finger 140 220 - -
Lele07g0175 519 MobiDBLite consensus disorder prediction 1 69 - -
Lele07g0175 519 Pfam Zinc-finger double-stranded RNA-binding 85 107 IPR022755 -
Lele07g0175 519 SMART c2h2final6 126 156 IPR013087 -
Lele07g0175 519 SMART c2h2final6 161 181 IPR013087 -
Lele07g0175 519 SMART c2h2final6 85 107 IPR013087 -
Lele07g0175 519 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Lele07g0175 519 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lele07g0175 519 Gene3D Classic Zinc Finger 64 130 - -
Lele07g0175 519 FunFam protein indeterminate-domain 12-like 64 132 - -
Lele07g0175 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lele07g0175 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 477 IPR031140 -
Lele07g0175 519 MobiDBLite consensus disorder prediction 1 16 - -
Lele07g0175 519 SUPERFAMILY beta-beta-alpha zinc fingers 84 181 IPR036236 -
Lele07g0175 519 MobiDBLite consensus disorder prediction 32 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0175 Lele-ChrLele07 927503 930011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0175 56 373 IDZ Gene Family AT5G66730 48.974 1.50e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g0175 zf-C2H2_jaz 7.6e-05 CL0361