Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0169 ATGGCAGACTCACAGGGTGATTCGAAAATGTTCAGTGTGCGGATTGTTTCCATCGACTACTACATGGCACCGCCGATTCCAGGCCTGGATATCTGTTACAGCAGCTTCCATGGTGGGAAGGTGAATGAGGTTCCAGTTGTAAGAATATATGGTTCTACACCAGCTGGGCAGAAAACTTGTTTGCATATACATCGGGCTTTGCCTTACATGTATGTGCCATGTGCTGATATACCTCTTCAGTCAGATCAAGAAGATGTGTACACATATAAGGTAGCTGCATCTCTTGAGAAAGCATTGAAGCTAAAAGGCGGTAGTGGTTTGATGAGACAACATGTACATGGCTGCAGCCTTGTAAGAGCAAGGAGATTTTATGGTTATCATTCATCAGAGGAGTTATTTGTGAAGATATACCTATATTACCCGCAAGATGTCTCCCGTGCCGCTAATCTACTATTGGTTGGTGCTGTTCTTGGGAAAAGCTTACAGCCCTATGAATCACATATCCCCTTCATTCTTCAGTTTCTGGTTGACTATAACTTGTATGGCATGGGTCATCTGCATTTGTTAAAGATGAAGTTCCGCCATCCTATGCCAGATTCTTCTCACAAGAAATTGATTTTCAATAGTCAACAGACGGAGGCTGATACAGATGGTGATGCGTGTTTAGGGTCAGCAGTGTGGACATCATCAATGGTCTCATCTGATTGGATTTGGCAACTTCCTAGTGGATTGGATGCTTCATCAAATCATGAGGCCCATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCACTTTAAAATGTATTCGTCCCTCTCACAAACCCGATCAGATCTGCAAATGGTTCAGTCTCTTGTACCAATCTGGAAGGAGCAGCAAGAAAGGACTGGGATTTATGAGGATACTATACCTCGTGATCCTGGGAAGCCACTGCCAGAAGTTGTTATGAGAAGTCTTTCTGCTGGTCTTCTTGACTTTGAGAAGAAGTTTGTTGAAATGTGCTGTGAAGCTGAAACCTGTTCATATTTTAATTCCTTTGAGGAGTTGAGAGAAACAGACATAATAGGTTCAGCATCACCACCTGCTTCACTATGCAAAGATGCTAAATTGCATGAAGAAGGGACTGAGGCAAATCTCAGATTGTTGACTGCTGCAGATAAGGAAGCATTGAATCTCCTGAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATCAACTCTGATGATGAGCTTATTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGATTACGAGAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGAGTCCATTGATGATCAACTTCAGTTGGAGTCATCAAAGAGAAAGCCACCTTTTTTCTCAAATTTTGATCATCCTGTTGAGTCTTCGTCAAACAACGTGATTCCTCAAGTTGATGGTTCTGCTGATGATGAGTTTTCAAGTCCAAGTGCTGGTTTGGCTGGGATTTCAGTTGCAGTGGACGAAAAAGGGGAATCCAAAAGGTCTTCCAATTACTGTATACTGCAAAATACCAGAACAAATACTTATAGCAAAGATAACAGGAATAAAGTTTGGGGCTCTTTGCCATTTTCAATGAGCCATGACAATTTTGGACATGCTAGCTTACATGTTGCCCATACATCTGAAAGGGAAACTGGAGAATCTGTTGACTCAGTTTATTTGGCCAGAAATGAGATAGAGAATAGTGGCATAACGAATGGGGATAAAGGTGCTTCAGACTTAAAAGAAGTACACACACTAGATAACTGTTCTGTGCGGGACTTGATGAGGAGAAAGAGATGTTATCGAGTTGAGCAAATTGACTGTGAATCTCAAATAACTAAAAGATTGCTTTTTGATGGGGATGAGAAGCTTAAAACTGATGAAGGAGAAACAGAAGTCCAGAAGAGCCGTGTTCTAAAAATGAGCAATAATGATTTAGTGTGTGGGAAATCACCCCTTGTAGTTGGCAGTTATACTGGGCCGAGTCTCTGTGAGCTGAAGAAGTTTTACTCTACTAGTTCTCCCAATTTCTTAGAGGTTTCCAGTTGTAAAAAGTTTAAGGTTGACTCAACATATGTACAAACTGACAACTGTCAACGAATTGACGTTGCAGCCTTAGGAAGCTTACAAAGCTCTTCTATTGAGAATTTAGGGTCTGGAAGAGATAATTGCATGTATGAATGTTCTTATGGAAGCAAATCTTATGAGCAACATGATCAGATGAAGTCATGTGAGAAAACAGAAACTGACATTCAAGTATTGCAATGTGTAAAAAGTGATGAGAAAAAACCTAGAGAGAATTTGGGCTTTTGTGACACTATTGGCATAGAACCCTTTGTCAATGACATGATGGGTAATCAAATGAGATTAACCTCTGGCAGGAGAGCTGCCATGGCAGTGAAAGCTCTGGATGATGTTATTCCTGCTTCTGCCGGGGGTTCCCTGAATGAGATGGAAACTTGGAACAAGCATGTTGCTGATAATGCCCCTGGGCATAAAGGGGAAAGGGTCTTGGGTGTTGCAACTTACTATCAAAATGATGGCGCTCATCTATGCTTATTGAAACCCAAAATTTTGCCTCCTTCTGAGGGTAGTGTTCAGAGATGGCTACTTCGTGATGAGAGAGATCAAATGTTTCCAGAAACTGATGCAAAGGAGAAGCATTTGCCTGAATGGAATACAAGACCCTGTCTTATGTCTAAACATGTCCAAGACGTTGATTCTGAAAAGAAGACTCCATGCACCAGTGGTGGACAAATGAATCTAAGTAAAACGGGCTTGGACATCTCACAAGATACTTCTCAGATATCAGGCCCTGATGTAAAATCAAAGTCTACTCCTCTAAGTCAAATTGGATTTCACGATCCTGCAAGTACTGGCTGTGGACAGCAATTGACACTACTCAGTATAGAGCTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCAGTTTGATGCCATCAACGTTGTAGCTCTTGGTTTTCAAAATGATAGTGGCGCTGTTGTTGATGATCTTGTTCTTTTGCATTGTAAACTAGAATCTTGTCAAAGAAATTTTGGGGGTCTATCAGGCTGCAAGGTGTTGGTCTTCACGGATGAAAAACACTTGCTAAAAAAATTTATTAAGATTGTGTCTTCATCTGATCCAGATATTCTGATGGGCTGGGATATTCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTACGCATCTTGGATTAGGATTACTTAATAGTTTATCTCGTACTCCATCTGACACTTGGATTACTTGTAATGATACTGAAACTTCTGAAAAAGATACGTCAGAAACTGCCATTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCTATAATCGAGGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTTGGTGGCAGAATTGTGCTTAATGTGTGGCGACTTATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGAAGCTGTAGCTGAAGCAGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTTCTCACCAAATGGTTTTCTGGTGGTCCTGGACGAGCAAAATATCGGTGTGTCAAATATATTACTGAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATATCGTGTTGAATCAATGTTTCTGAGGTTGGCACATACACAAAACTATCTTGCCATCTCTCCTGGGAATCATCAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTTGTGATGGAACCAGAGTCAGGATTTTATTCAGACCCGGTTATTGTATTTGACTTTCAGTCATTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGGCATCAAAAGCAAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAGCAGGTTTTGCAGGATTTAAAAGATCGGATCTTGCTTACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTACCACGCTTGTTGGAAGAAATTTTATCAACTAGGATAATGGTGAAACAAGCAATGAAAAAGTTGGGTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCTAGGCAGCTTGCTTTGAAGCTTATATCAAATGTGACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGCGCAGAGCTTGCAGACAGTATTGTTCAATGCGGCCGTTGCACCCTGGAGAGGGCTATATCATTTGTAAATCAACACGATAAGTGGAATGCAAAAGTCATTTATGGAGATACCGATAGCATGTTTGTTCTCCTCAAAGGACGCACTATTAAAGAATGCTTCCAAATTGGGAGTGAGATTGCTTCTGCTGTCACTGCTATGAACCCTAGTCCTGTCACCCTGAAGCTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAGAAGCGTTATGTTGGTTATAGTTATGAAAGCCCTGATCAAGTTGAGCCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGTAGAGATACATGCGGTGCAGTTGCAAAGACAATGGAACAGTCTTTGAGGCTCTTTTTTGAAAATCAGGATTTATCAGAGGTGAGAAGTTATTTACAACGTCAGTGGAAGAGAATTCTTTCATGCAAAGTCTCCCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGCCTAGGTAGCTATAGTGCAAGGACATCATCATCTTTACCTCCAGCTGCAATTGTTGCCACCAAGGCTATGAGGTTTGATCCTAGGGCAGAACCACGCTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGGGCCCGCCTGGTTGACATGGTTGTGGATCCATTGGAAGTTTTGGCACTTGATTCCCCATTCAGAATAAATGACTTGTATTATATTAATAAACAAGTAATACCTGCTTTGCAGCGAGTGTTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTCTTAGAGATGCCCCGTCCTTTAAAGGAAGCCCGTGTAAAGCATCTCATTGCTCCAAATTCACATCGAACAAGAATTGACTCGTATTATATGTCAAAGCATTGTATACTGTGTGGCGGATTGGTTCAGGCATCTACACATATATGCGTTCAGTGTTCTGAAAATGGAGTGGATGCTACAACGGCCGTGACTAGTAAAACATCAAAGTTGGAACAAGAGATGCAGCATCTTGTTGCTATATGTGACCATTGTGGAGGTGGAGACAGGCTTCTGGAAAGTGATATAAAGTGCACGTCAATTTCATGCTCGGTGTTTTTTGAGAGACGAAAAGTTCAGAAAGAACTGCTAGCTATGAACCACGTTGCCTCTGGCGAAGGCTTCTATCCGAAATGCATGGTCGAGTGGTTCTGA 5556 0.4167 MADSQGDSKMFSVRIVSIDYYMAPPIPGLDICYSSFHGGKVNEVPVVRIYGSTPAGQKTCLHIHRALPYMYVPCADIPLQSDQEDVYTYKVAASLEKALKLKGGSGLMRQHVHGCSLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLVGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHLHLLKMKFRHPMPDSSHKKLIFNSQQTEADTDGDACLGSAVWTSSMVSSDWIWQLPSGLDASSNHEAHCPKRQSTCELEGDASVDEILNQHFKMYSSLSQTRSDLQMVQSLVPIWKEQQERTGIYEDTIPRDPGKPLPEVVMRSLSAGLLDFEKKFVEMCCEAETCSYFNSFEELRETDIIGSASPPASLCKDAKLHEEGTEANLRLLTAADKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDKVLEKANMDYESESQKECQDILESIDDQLQLESSKRKPPFFSNFDHPVESSSNNVIPQVDGSADDEFSSPSAGLAGISVAVDEKGESKRSSNYCILQNTRTNTYSKDNRNKVWGSLPFSMSHDNFGHASLHVAHTSERETGESVDSVYLARNEIENSGITNGDKGASDLKEVHTLDNCSVRDLMRRKRCYRVEQIDCESQITKRLLFDGDEKLKTDEGETEVQKSRVLKMSNNDLVCGKSPLVVGSYTGPSLCELKKFYSTSSPNFLEVSSCKKFKVDSTYVQTDNCQRIDVAALGSLQSSSIENLGSGRDNCMYECSYGSKSYEQHDQMKSCEKTETDIQVLQCVKSDEKKPRENLGFCDTIGIEPFVNDMMGNQMRLTSGRRAAMAVKALDDVIPASAGGSLNEMETWNKHVADNAPGHKGERVLGVATYYQNDGAHLCLLKPKILPPSEGSVQRWLLRDERDQMFPETDAKEKHLPEWNTRPCLMSKHVQDVDSEKKTPCTSGGQMNLSKTGLDISQDTSQISGPDVKSKSTPLSQIGFHDPASTGCGQQLTLLSIELLAESRGELLPDPQFDAINVVALGFQNDSGAVVDDLVLLHCKLESCQRNFGGLSGCKVLVFTDEKHLLKKFIKIVSSSDPDILMGWDIQGGSLGFLAERATHLGLGLLNSLSRTPSDTWITCNDTETSEKDTSETAIPDISSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKVPSIHNKVLTKWFSGGPGRAKYRCVKYITERAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYSDPVIVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQQVLQDLKDRILLTPNGVMFVPSKVRRGILPRLLEEILSTRIMVKQAMKKLGPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQVEPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFENQDLSEVRSYLQRQWKRILSCKVSLKDFVFAKEVRLGSYSARTSSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLEVLALDSPFRINDLYYINKQVIPALQRVFGLVGADLNQWFLEMPRPLKEARVKHLIAPNSHRTRIDSYYMSKHCILCGGLVQASTHICVQCSENGVDATTAVTSKTSKLEQEMQHLVAICDHCGGGDRLLESDIKCTSISCSVFFERRKVQKELLAMNHVASGEGFYPKCMVEWF 1851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0169 1851 Pfam DNA polymerase family B, exonuclease domain 990 1142 IPR006133 -
Lele07g0169 1851 Pfam DNA polymerase family B, exonuclease domain 55 204 IPR006133 -
Lele07g0169 1851 Gene3D Palm domain of DNA polymerase 1302 1547 IPR023211 -
Lele07g0169 1851 Pfam DNA polymerase family B 1257 1705 IPR006134 GO:0000166|GO:0003677
Lele07g0169 1851 PRINTS DNA-directed DNA-polymerase family B signature 1316 1329 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele07g0169 1851 PRINTS DNA-directed DNA-polymerase family B signature 1481 1489 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele07g0169 1851 PRINTS DNA-directed DNA-polymerase family B signature 1425 1437 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele07g0169 1851 MobiDBLite consensus disorder prediction 937 976 - -
Lele07g0169 1851 ProSitePatterns DNA polymerase family B signature. 1483 1491 IPR017964 GO:0000166|GO:0003676
Lele07g0169 1851 FunFam DNA polymerase 30 195 - -
Lele07g0169 1851 Pfam C4-type zinc-finger of DNA polymerase delta 1750 1823 IPR025687 -
Lele07g0169 1851 SUPERFAMILY DNA/RNA polymerases 1303 1716 IPR043502 -
Lele07g0169 1851 Gene3D - 1027 1299 IPR036397 GO:0003676
Lele07g0169 1851 Gene3D Helix hairpin bin 1382 1442 - -
Lele07g0169 1851 CDD POLBc_zeta 1264 1713 - -
Lele07g0169 1851 FunFam DNA polymerase 1558 1727 - -
Lele07g0169 1851 FunFam DNA polymerase 999 1299 - -
Lele07g0169 1851 CDD DNA_polB_zeta_exo 989 1238 - -
Lele07g0169 1851 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Lele07g0169 1851 MobiDBLite consensus disorder prediction 935 976 - -
Lele07g0169 1851 Gene3D - 1558 1722 IPR042087 -
Lele07g0169 1851 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 6 1843 IPR030559 GO:0006281|GO:0016035|GO:0019985
Lele07g0169 1851 SUPERFAMILY Ribonuclease H-like 36 1263 IPR012337 -
Lele07g0169 1851 SMART polmehr3 990 1495 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele07g0169 1851 FunFam DNA polymerase zeta 1383 1442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0169 Lele-ChrLele07 875909 896179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0169 39 208 Core DNA Replication Machinery Family AT5G63960 25.714 2.40e-10 63.9