Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0102 ATGGAGCAGTATGAAATACTCGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCACGAGAAGAAGAAATATGTTTTGAAGAAGATCCGCCTGGCCCGCCAAACTGATCGATCTCGTAGATCTGCGCACCAGGAGATGGAGCTAATCTCTAAATTCAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTGTGCATTATTATAGGTTACTGCGAGGGTGGAGATATGGCGGAAGCTATTAAAAAAGCAAATGGCATTCTTTTTCCAGAGGAGAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCACATGAACCATATTCTTCATCGGGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCTTCTGTTGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCCGATATTCCTTATGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTATATATGAAATGACAGCACATAAGCCTGCTTTTAAAGCATTTGATATACAAGCACTGATAAATAAGATTAACAAGTCCATAGTGGCCCCACTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGCGCCGCGGAGCTACTTGGGCACCCTCATCTTCAGCCTTATGTTCTCAAGATCCATCTTAAAATCAATAACCCCAGACGAAGTACACTCCCAGCCAATTGGCCAGACTCCAAATACGCGAAGAAGACTAGATTTGTGGAGCCAGGAGATTATCCTACTTCCACCTACAGGGATAAGCGGAATTCTTTTAAAAATGACCGGAATTTGAATCCTAGCATATCTGGAGCTGAGCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTACTCCAGATCATTTGAATCACCGGTTAGCAGAACTGTGCATTGGGGATAGCCTTGAAGCGAACAAAATCCGTAAGCCAGGTGTTTCCAGGAATTCAGGCATTTCTAGAACTCCAAGATTTACTTCATCAAAAGCTTTTGCCACCCCTAAGAAACAAATGGAGTTTTCAAAGAATCGTGAGCTGCATCCGATTTCACACAATACCAGAAAATCTCTCCATACAACACGCAGAGCATCATTTCCGTTGCCAAAAGGAGGTGCTTTTCTTGGCCATGTAAACTCACCTCATATTTCTGTCAACTCTCCCCGAATTGACAGGATGGCTGAATTCCCATTATCATCATTTGAGGGTCCGCTGTTACCCGTTAATAGAACTTCATCAACCTCTGCACAGGGTTCCTCAGTCTCCCCGCCTTGTGGTGATCGTCCAATCATGAAAGATAAATGCACTGTTGAGGTTTCTGATAGAGCTGCTGTCAGGCCTAGTTTGACGGATGCTTTGCAGAGAACCAAATGCAACACGTATCAGGAAAATGCTGAGGTGAAAAGTGGGTCCTTTGATCAAAATGTAACTGCCGGCGCATCAAGCCATAATTCTTTAGACTGGCATGGCCGGCATTTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTCGAATTTAGTGCAAGGTTGCTACAACAGGAAAGGTATGAAGAACTTGGGGTCTTGTTGAAACCCTTTGGACCTGGGAAGGTCTCTCCTCGTGAAACTGCTATCTGGTTGAGTAAAAGCTTCAAAGAAAACACTCAACCGTGA 1818 0.4307 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINNPRRSTLPANWPDSKYAKKTRFVEPGDYPTSTYRDKRNSFKNDRNLNPSISGAEQDSVCSTLEIDCTPDHLNHRLAELCIGDSLEANKIRKPGVSRNSGISRTPRFTSSKAFATPKKQMEFSKNRELHPISHNTRKSLHTTRRASFPLPKGGAFLGHVNSPHISVNSPRIDRMAEFPLSSFEGPLLPVNRTSSTSAQGSSVSPPCGDRPIMKDKCTVEVSDRAAVRPSLTDALQRTKCNTYQENAEVKSGSFDQNVTAGASSHNSLDWHGRHFDTSSYQQRAEALEGLLEFSARLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQP 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0102 605 CDD STKc_Nek 3 258 - -
Lele07g0102 605 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Lele07g0102 605 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Lele07g0102 605 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lele07g0102 605 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Lele07g0102 605 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lele07g0102 605 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g0102 605 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g0102 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lele07g0102 605 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 560 - -
Lele07g0102 605 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g0102 605 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Lele07g0102 605 MobiDBLite consensus disorder prediction 297 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0102 Lele-ChrLele07 565472 569456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0102 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 3.40e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele07g0102 Pkinase 1.8e-63 CL0016