Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2796 ATGTCGTCTGACTCTGATGCCACCTTCCCCAATTCGTCGTCATCTTCGACACCATTGCAAGTGGACGATCCCCAAATTCGAAGATTGTCTATGATTCTCCCTCTGCTTCTCAGTTTAGCGCGGCCTCGCCAGACCCCGGAATTCGATTCTGTTAGCCACCGTGGTCGAGTCCGGATCATCATAGTTGACCCTTCAGCTGGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTTCAATCCGTGCTTCAAGGCCTATCAGGGAAGCCCGGAGTGCCGCCGGCTTCCAAAGATTCGATTCAGGCTATGCCCAGAGTGGTGGTGACGGAAGAAGGCGCGGATTGTCCGATCTGCTTGGAAGCTTACGAAGTGGGCGGCGAAGCTAGGGAAATGCCTTGCAAGCATAAATTCCACTGTGAGTGTATTGAGAAGTGGTTAGGGCTTCACGGGTCCTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAAACACCAGTATCACCATCATGGGCAGCGAGGGCGAGCAAGATGGTGGCGAGAGGAGTGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCGCTGGAAGAAGATGAAGATGATGACGAAGAAGACGATGATCCGATGGAAGTGGATTCAGAGTCGGATCATGTAACCGGGGGATCCAATAGTGATTCACGAGAAGGGAATTCTGCAGGGGATGAGGACTCGTGGATGATGATGGATCACGAGGCACAAGACATGGAATTCTGA 762 0.5354 MSSDSDATFPNSSSSSTPLQVDDPQIRRLSMILPLLLSLARPRQTPEFDSVSHRGRVRIIIVDPSAGAMIVIEGSGDLQSVLQGLSGKPGVPPASKDSIQAMPRVVVTEEGADCPICLEAYEVGGEAREMPCKHKFHCECIEKWLGLHGSCPICRYAMPAEEENTSITIMGSEGEQDGGERSESGEGLVSVSVWVRSLEEDEDDDEEDDDPMEVDSESDHVTGGSNSDSREGNSAGDEDSWMMMDHEAQDMEF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2796 253 Pfam Ring finger domain 113 155 IPR001841 -
Lele06g2796 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 159 - -
Lele06g2796 253 SUPERFAMILY RING/U-box 108 160 - -
Lele06g2796 253 FunFam E3 ubiquitin-protein ligase RNF181 83 161 - -
Lele06g2796 253 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Lele06g2796 253 SMART ring_2 114 154 IPR001841 -
Lele06g2796 253 MobiDBLite consensus disorder prediction 1 23 - -
Lele06g2796 253 MobiDBLite consensus disorder prediction 198 215 - -
Lele06g2796 253 MobiDBLite consensus disorder prediction 232 253 - -
Lele06g2796 253 MobiDBLite consensus disorder prediction 171 253 - -
Lele06g2796 253 CDD RING-H2_PA-TM-RING 113 155 - -
Lele06g2796 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2796 Lele-ChrLele06 35584234 35584995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2796 27 196 C3H Transcription Factor Family AT1G26800 41.279 8.20e-37 127