Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2792 ATGGTCCCAACAGCTCAAAATGTGTCAGGTGGTCTGTCAGCTTTGACGTTGACTGGCCTCTATTTATTCCCACTCCAAATCCCCCCTCCTCATCTCCTCAAAACACCACCTTCCAAGGAAACAAAAATGGGTCTTGTTCCTTTCGGCTTTCTTCTTCTTCTGGGATTTGTCTCCTCTGTCCATGGCTACGGAGGCTGGAACAATGCTCATGCAACTTTCTACGGGGGCAGTGATGCTTCAGGAACTATGGGAGGGGCTTGTGGGTATGGAAATCTTTACAGTCAAGGGTATGGGACAAACACAGCAGCCGTGAGCAGTGCTCTGTTTGAGAATGGACTGAACTGTGGTGCATGTTATCAGATAAGATGTGTGAATGATCCACAATGGTGTCTACCAGGAACTATTGTGGTCACTGCCACTAATTTTTGCCCACCAGGTGGTTGGTGTGACCCTCCCAACCTCCATTTTGATCTTTCCCAACCTGTTTTCCAGCACATTGCTCAGTACAAAGCTGGCATTGTTCCTGTCAGTTACAGAAGGGTAAGGTGTAGGAGAAGAGGAGGAATAAGATTCACCATCAATGGACATTCATACTTCAATTTAGTGCTGGTTACAAACGTTGGAGGAGCTGGAGATGTGCATGCAGTGGCAATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGTCAGGCCCTTTCCTTCTTGGTCACCACCAGTGACGGTCGCTCTCTCGTCTCTTACAACGTTGCCCCACCCTCTTGGTCCTTTGGCCAGACCTACCCTGGACGCCAATTTCGATACTGA 849 0.4853 MVPTAQNVSGGLSALTLTGLYLFPLQIPPPHLLKTPPSKETKMGLVPFGFLLLLGFVSSVHGYGGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAAVSSALFENGLNCGACYQIRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNLHFDLSQPVFQHIAQYKAGIVPVSYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQALSFLVTTSDGRSLVSYNVAPPSWSFGQTYPGRQFRY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2792 282 SMART dpbb_1 101 178 IPR007112 -
Lele06g2792 282 Gene3D - 188 280 IPR036749 -
Lele06g2792 282 Pfam Expansin C-terminal domain 189 266 IPR007117 -
Lele06g2792 282 FunFam Expansin 188 280 - -
Lele06g2792 282 SUPERFAMILY PHL pollen allergen 185 276 IPR036749 -
Lele06g2792 282 Pfam Lytic transglycolase 101 178 IPR009009 -
Lele06g2792 282 Gene3D - 55 184 IPR036908 -
Lele06g2792 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 123 134 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 96 110 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Lele06g2792 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Lele06g2792 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 188 IPR007112 -
Lele06g2792 282 PANTHER EXPANSIN-A15 58 280 IPR002963 GO:0009664
Lele06g2792 282 SUPERFAMILY Barwin-like endoglucanases 52 206 IPR036908 -
Lele06g2792 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 277 IPR007117 -
Lele06g2792 282 FunFam Expansin 56 184 - -
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Lele06g2792 282 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2792 Lele-ChrLele06 35567435 35568941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2792 42 281 Expansin Gene Family AT2G03090 77.108 5.42e-140 392