Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2784 ATGGGGTGGGAGGAGATGGTGAAGGAGGCTGCTGCGCTGGGAGGTCTCCGACGAGCCCGAAAGCGATTCGTGGGGGTCCGGCAGCGGCCTTCGGGGCGGTGGGTGGCGGAGATAAAAGACACCATACAGAAGATAAGGGTGTGGCTTGGCACTTTTGACACTGCAGAGGAAGCAGCCAGAGCTTATGATGAAGCCGCTTGCTTGCTTCGAGGATCCAACACCAGAACAAATTTCTGGCCATGTCAATCTCAATCCAATTCTTCAACTCCTGCTCTTTCTTCAAAAATCACCAATCTCCTCCTCCAAAGACTCCAAGCAAGAGACCACCAAATCCATAACTCTTCACCTTCTTCTTCCTCCTCCTCCTCTGTTTCTTCCCTGCTTATCAGTCAGCAACAGAACCAAGAAGCAGAGGAAAAATCAGAGTTTTCAATTGACCAGTTCACTGACTTTCTTAATGATCCTGAGGATTATTACACCACAACAACAAGCAACAACAGTGAACAGTTCGATTACATTACTCGTAGTTTTGAGTCGTGTTTGACCGAGAACAACGAGTGCAAGGAAGGAGCAGAGATAATTGACGATTCGGGTGTGGTAACAGAGGAAGAAAGCAGTAGCGAGGTTGATATGGGGTCGCAGGATTTTGGGTTTCTGGACAGCGTGGTTCCATCATCATGGTACAACTATTCACCATTTGAGATCGCTCGAGAAATGAAGGAGGAGGAGGAGGAGGAGGGTGAGAGCTATGGTGGTGGGGATGAGCCTTCTGTGCTGAGAGCAGCCGTGAAGAGGATGAAGTATGAGAGGAAGTTCTCTGCTTCTCTGTATGCCTTCAATGGGATATCAGAATGCTTGAAGTTGAAACTTGGATCGGCAAACTTGAAGGGAAGAACAGTTTCTGAGCAACTATCTAATCTGCAGATGGCATGTTCCAGTAAGAACGAAGTTGAGAAGAAAGATATCAATACCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCCCACAAGCGTCAATTGATATTTCTGATTCCTCTTCTTCTTCTTCTTCTGGTAATGATATTGAATTGATTTGGAATTCACTGGATCTTCCTCCAATTGCTTTGTTAGCTAATTACTGA 1125 0.4604 MGWEEMVKEAAALGGLRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGSNTRTNFWPCQSQSNSSTPALSSKITNLLLQRLQARDHQIHNSSPSSSSSSSVSSLLISQQQNQEAEEKSEFSIDQFTDFLNDPEDYYTTTTSNNSEQFDYITRSFESCLTENNECKEGAEIIDDSGVVTEEESSSEVDMGSQDFGFLDSVVPSSWYNYSPFEIAREMKEEEEEEGESYGGGDEPSVLRAAVKRMKYERKFSASLYAFNGISECLKLKLGSANLKGRTVSEQLSNLQMACSSKNEVEKKDINTEEEEEEEEEEESPQASIDISDSSSSSSSGNDIELIWNSLDLPPIALLANY 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2784 374 MobiDBLite consensus disorder prediction 110 142 - -
Lele06g2784 374 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Lele06g2784 374 Coils Coil 314 335 - -
Lele06g2784 374 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Lele06g2784 374 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 273 - -
Lele06g2784 374 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Lele06g2784 374 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lele06g2784 374 MobiDBLite consensus disorder prediction 315 353 - -
Lele06g2784 374 MobiDBLite consensus disorder prediction 110 138 - -
Lele06g2784 374 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Lele06g2784 374 MobiDBLite consensus disorder prediction 322 339 - -
Lele06g2784 374 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Lele06g2784 374 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Lele06g2784 374 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Lele06g2784 374 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2784 Lele-ChrLele06 35493485 35494609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2784 20 100 AP2-EREBP Transcription Factor Family AT5G19790 73.810 8.82e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele06g2784 AP2 6.3e-15 CL0081