Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2780 ATGGTTGACTTGGTCAAATCTGAGGAGTTCTTTTTTCTCCGATACAGTTTTAACAAACAGATGGAGAGCACCGAAAAAGTGAACTTTTCTGAATCCTTGTCTGAGCTAATTGGTTTGGCTGATGAGGTTATTTCCTGTGCTCAGAACTGTGAAAGTGAAAAGAATGCTTTTGCTGAGTTCGCCATATTAGTAGAGGAATTTGTACCAATCTTCAGTGATTTGAGAGACAAAAGCACGGTCATGGACAAGCCACCTATTAGAAAATCGTTGGAATCTCTTCAGAATGAGCTTAGGCGTACTAAGGCTTTGACAAAAAGCCTTAATCAGAAACATCTTATTAAACAGATTGAGGACATAACTCATGATCTTGGTCGATCATTGGGACTGCTGCTTGTGTCCAGCCTTGAAGTGTCAACTGATTCTAGAGATAAGATTAGTGCATTGCAGAGAAAGTTGATGGGTGCACGGTTTGGTGGAAATACGAGTTCAACTTCGAGTCCGAGATCAGAGTTTGTCAGTGATGTGAAGCTTGAAGGGGAAATAGAAGAAGAAATAGTTGACTTAACTATAGACGATGTTATATTGCAACTTAAACATGGTAATGATGAAGAAGTCACAGTTGCACTTTTGAGACTAAAGGAGTTTATCAGAGATGAGAAAGCAAATTATGATTTAATTAACGAGGAAGTGCTCGTTGCCATTCTAATGAATCGACTAGGTTCAAGTAAGGCTGACAATAGGCTGACCATCCTTCAATTACTAAGAAGCATTGCTTTTGGCAATGATGAAACGAAGGAGAAGATGGCAGATATTGAGTTTTTATCAACTGTGGTGAAGTCTCTATCAAGGGAAGCGGAAGAAAGGAGAGAAGCTGTGGGGCTTTTACTAGACCTCTCTAACCTTCCTTCAGTTAAGCGACGAATAGGAAGAATTCAAGGGTGTATCGTTATGCTGGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCAGCAAAGTTGTTGGATATATTGTCTAGTAATTCTCAAAATGCTCTTCATATGTCAGAGGCTGGTTACTTTAAGCCACTAGTGCAGTATCTGAAGGAAGGGTCTGACATGACCAAGATACTCATGGCAACAGCGCTGTCCAGATTGGAGCTCACTGATCACAGCAAATTCACACTTGGAGAAGATGGGGTGATTGAGCCTTTAGTCAACATGTTTACAACTGGGAAGCTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATTTGTCGAGCTTGACAGAAAATGCGCAACGTTTGATCAGATCTGGAATTGTGGTATCTCTGCTTCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTTCGAGAGCCTGTATCGGCGATTCTTGCAAGAATTGCTAAGTCAGAGCCCTTGCTTATTATTCCAGAAGCGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCAATAATTCAGATTCATCTATTAGAAGCACTAGATAGCATCGCTGCTCATCCAGGCGCCTCGAGAGTGAGAAAAAAAATGAAGGAAAAAGGCGCACTTCAGCTTCTTTTACCTTTCTTGATGGAAACCAACACCAAAATCCAGTGCAAGGCCTTGCAATTTCTGTACACTCTCTCCAAAGATCTAACAGAAGAGTTAACAGAACATCTTGATGATACCCATCTGTTTAAAATTGTCAATATTATCTCATCATCAACATCTGAGAGTGAAAAGGCTGTTGCTGTTGGTTTACTCAGTAATCTTCCCATTAGTGATACGAAAGTGACAGATGTACTGAAGAGGGCAAATTTGCTTCCTATTTTAACATCCATTATGTCTTCAAGCACAGGAAGTAATTCACCCACGACAAGTTGCCTATTGCAGAATGTTGTGGGTGTTACAATCCGCTTCACGAATCCTTCTGACAAGAAGCTACAACTTCTCTCAGCAGAACACGGTGTAATTCCTTTGCTCGTAAAACTGCTCTCAACTGGCTCACCGATCACAAAATCCAGGGCTGCAACCTCACTTGCTCAATTATCCCAGAATTCTATGCCTCTTGGGAGATCTAGAAAATCAAGATGGTTTTGCGTTCCTCCCTCGGCAGATGCCCATTGTGAAGTTCATGACAGTAATTGCTTAGTGAAAAGCACATTTTGTTTAGTCAAAGCCGGTGCGGTTCCTCCACTCATCCGAATATTAGAAGATAAAGAGAAGGAAGCCGTTGAAGCTGCTTTGATCGCACTCTCAACTCTATTACAAGATGAAATATGGGAAGGCGGTGTCAACTTCATAGCTAAATCCTCAGGTGTTCAGGCTATTATAAAAATTTTAGAAGTGGGGGATGTAAAGATCCAAGAGAAAGCACTTTGGATATTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTTAAATTTGGAGAATCTGCTCAGGTTGTTCTTATTGATCTCGCACAGAAGAGTGATTCTAGATTGAAGTCAGCAGTTGCAAAAGTATTAGCTGAGCTAGAACTCTTGCAAGCTCAATCAACTTACTTCTAA 2550 0.4082 MVDLVKSEEFFFLRYSFNKQMESTEKVNFSESLSELIGLADEVISCAQNCESEKNAFAEFAILVEEFVPIFSDLRDKSTVMDKPPIRKSLESLQNELRRTKALTKSLNQKHLIKQIEDITHDLGRSLGLLLVSSLEVSTDSRDKISALQRKLMGARFGGNTSSTSSPRSEFVSDVKLEGEIEEEIVDLTIDDVILQLKHGNDEEVTVALLRLKEFIRDEKANYDLINEEVLVAILMNRLGSSKADNRLTILQLLRSIAFGNDETKEKMADIEFLSTVVKSLSREAEERREAVGLLLDLSNLPSVKRRIGRIQGCIVMLVSILNGDDPVASHDSAKLLDILSSNSQNALHMSEAGYFKPLVQYLKEGSDMTKILMATALSRLELTDHSKFTLGEDGVIEPLVNMFTTGKLESKLSALNALQNLSSLTENAQRLIRSGIVVSLLQLLFSVTSVLMTLREPVSAILARIAKSEPLLIIPEAAQQMLSLLNLSSPIIQIHLLEALDSIAAHPGASRVRKKMKEKGALQLLLPFLMETNTKIQCKALQFLYTLSKDLTEELTEHLDDTHLFKIVNIISSSTSESEKAVAVGLLSNLPISDTKVTDVLKRANLLPILTSIMSSSTGSNSPTTSCLLQNVVGVTIRFTNPSDKKLQLLSAEHGVIPLLVKLLSTGSPITKSRAATSLAQLSQNSMPLGRSRKSRWFCVPPSADAHCEVHDSNCLVKSTFCLVKAGAVPPLIRILEDKEKEAVEAALIALSTLLQDEIWEGGVNFIAKSSGVQAIIKILEVGDVKIQEKALWILERIFRVEEHRVKFGESAQVVLIDLAQKSDSRLKSAVAKVLAELELLQAQSTYF 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2780 849 Gene3D - 28 121 IPR036537 GO:0007166
Lele06g2780 849 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Lele06g2780 849 SUPERFAMILY ARM repeat 391 804 IPR016024 -
Lele06g2780 849 Coils Coil 90 110 - -
Lele06g2780 849 Gene3D - 183 382 IPR011989 -
Lele06g2780 849 SMART arm_5 343 383 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 717 757 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 761 801 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 510 550 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 645 685 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 425 468 IPR000225 GO:0005515
Lele06g2780 849 SMART arm_5 384 424 IPR000225 GO:0005515
Lele06g2780 849 Gene3D - 640 840 IPR011989 -
Lele06g2780 849 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 190 849 - -
Lele06g2780 849 Gene3D - 388 639 IPR011989 -
Lele06g2780 849 SUPERFAMILY ARM repeat 189 445 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2780 Lele-ChrLele06 35476190 35479588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2780 200 849 U-box Gene Family AT1G20780 29.009 4.60e-50 187