Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2749 ATGGACATGGGACCATATTACTACATGTTACCTCGGCCATTGGAGCTGCTGCATAAAGGCATTTTGAAAGCCATATATTTCTCAAGAACCAACGTATACTGCATTGGCATGAATCATGTTGTTTACTTGCTAGAGTTGCCTTTAGTCATCAGGATAAGAGTTCTTCCTTCTACTCTTTGCAAAGCGTTTTCTTCAAGGACTTTACTTGCTGCTATTGCTTCAACCAGTAAGAGCAATATAACACAAGAAATCAATTCAGATATGTCTATTAGAACCTCTATCTATCTATATATATATAACTCCCGAGGGGCAAAAGCAGTACGAGGCATGTCCATTATAGTCAAATTTGCTCTTGACCAAGGATTGAGCCCGCATGTTCTAGTAGTATATCGTCATGCCCTTGCATTTCTTGTGATTTCTCCTTTTGCAACTTTCCTTGATAGGTCTTCTTCTACTGATCTCTCTGTACTTGTAAGAAATCCAAGGCCTAAAATGACATTTTCTTTGTTGGTAAAGATTATGCTGCTTTCATTATTAGAGCCAGTCATGGATCAGAACTTGTACTTAATCGGGATGAAGCTCACTACTGCAACATACACATCCACTTTGTTTAATGTTGTTCCTGCTTTTGCATTTCTATTTGGTTGGACTCTAAAACTTGAGAAGGTTGACATTAGGAGAGTGAATAGCCAGGCAAAGCTATTGGGAACTGCAGTAACTGTAGGAGGAGCAATGATGATGACTTTTGTGAAAGGATCAGTGTTGAATTTGCCTTGGACAGAAAAAGTAGACTCATCAGACCAAGAGACTCACAGTTCTTCAGATGATCACAATCTCATTTATGGTTCTCTAATGATAGCAACAGGCTGTGTCTGCTGGACTGTTTTCATCACCCTTCAAGCAATCTTACTAAAATCGTACCCAGATGAGCTCTCTATGGCAGCTTGGATATGCTTGATGGGTGCAGTGGAAGGAACAGTGTGTGCACTTGTGATTGAGTGGCACAATCCTTCAGTTTGGTCCATCCACATGGACTGTAGATTATTAGCTGTGCTGTATGGTGGAGTGATATGCTCAGGAGTTGCTTACTATGTTCAAGGACTGATCATGAAGGAAAAAGGGCCTGTTTTCCTCACTGCTTTCGGCCCCCTAAGCATGATCATCGTCACAATCATGGGCTCAATTGCTCTAGCAGAAAAAATCTACACTGCAAGGGTGTTTGGAGCGATTGTGATTGTGATTGGGCTGTATATGGTTTTATGGGGGAAAAGCAGAGACACCGAGGAAGTGAAATCAGAATCTGCAACTGCAACAAATGATTTCAATTGTTCAGCTGAGAGGACAGAATCTGCAGGGGATAGACAAAGATCAGATGATCATGATCACAGCATAGCCATGGCCAACTGCTTTATGCTGCTTTCCGAGGCCGCGGCCTCCACCGACCGTGTCTTCGTCTGCAAGACCTGTAATCGCCAGTTCTCGTCCTTCCAGGCGCTCGGAGGCCACCGTGCCAGCCACAAGAAGCCCCGGACGATGACGCCCGGTGGGGAAAGTAACAGCAACAGCGACGATTCGTCGTCACCAGCTAAGCCTAAAACTCATGAGTGCTCAATCTGTGGATTGGAGTTCGCCATAGGTCAGGCTTTGGGGGGTCACATGAGGAGACACAGAGCTCTAACATCTCATAATAATAACAGTAACAGCTCGTCATCATCAAGCGTAGAGTTTGATTCAGATGCAATGAAGAAGAAGAAGAAGAGCAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCGCTTGAGAACGATTTAGAGATCTTAGGGATAGGAGCCTCGACTCCGTTTCTAGTGACACTATAA 1860 0.4371 MDMGPYYYMLPRPLELLHKGILKAIYFSRTNVYCIGMNHVVYLLELPLVIRIRVLPSTLCKAFSSRTLLAAIASTSKSNITQEINSDMSIRTSIYLYIYNSRGAKAVRGMSIIVKFALDQGLSPHVLVVYRHALAFLVISPFATFLDRSSSTDLSVLVRNPRPKMTFSLLVKIMLLSLLEPVMDQNLYLIGMKLTTATYTSTLFNVVPAFAFLFGWTLKLEKVDIRRVNSQAKLLGTAVTVGGAMMMTFVKGSVLNLPWTEKVDSSDQETHSSSDDHNLIYGSLMIATGCVCWTVFITLQAILLKSYPDELSMAAWICLMGAVEGTVCALVIEWHNPSVWSIHMDCRLLAVLYGGVICSGVAYYVQGLIMKEKGPVFLTAFGPLSMIIVTIMGSIALAEKIYTARVFGAIVIVIGLYMVLWGKSRDTEEVKSESATATNDFNCSAERTESAGDRQRSDDHDHSIAMANCFMLLSEAAASTDRVFVCKTCNRQFSSFQALGGHRASHKKPRTMTPGGESNSNSDDSSSPAKPKTHECSICGLEFAIGQALGGHMRRHRALTSHNNNSNSSSSSSVEFDSDAMKKKKKSKRVLFLDLNLTPLENDLEILGIGASTPFLVTL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2749 619 SUPERFAMILY Multidrug resistance efflux transporter EmrE 341 425 - -
Lele06g2749 619 ProSiteProfiles Zinc finger C2H2 type domain profile. 534 561 IPR013087 -
Lele06g2749 619 ProSitePatterns Zinc finger C2H2 type domain signature. 536 556 IPR013087 -
Lele06g2749 619 ProSiteProfiles Zinc finger C2H2 type domain profile. 484 511 IPR013087 -
Lele06g2749 619 MobiDBLite consensus disorder prediction 512 527 - -
Lele06g2749 619 PANTHER WAT1-RELATED PROTEIN 109 432 IPR030184 GO:0016020|GO:0022857
Lele06g2749 619 MobiDBLite consensus disorder prediction 500 533 - -
Lele06g2749 619 ProSitePatterns Zinc finger C2H2 type domain signature. 486 506 IPR013087 -
Lele06g2749 619 SUPERFAMILY Multidrug resistance efflux transporter EmrE 130 249 - -
Lele06g2749 619 Pfam EamA-like transporter family 282 420 IPR000620 GO:0016020
Lele06g2749 619 Pfam EamA-like transporter family 120 246 IPR000620 GO:0016020
Lele06g2749 619 Pfam C2H2-type zinc finger 483 509 - -
Lele06g2749 619 Pfam C2H2-type zinc finger 534 558 - -
Lele06g2749 619 SMART c2h2final6 484 506 IPR013087 -
Lele06g2749 619 SMART c2h2final6 534 556 IPR013087 -
Lele06g2749 619 Gene3D Classic Zinc Finger 482 556 - -
Lele06g2749 619 SUPERFAMILY beta-beta-alpha zinc fingers 482 556 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2749 Lele-ChrLele06 35289254 35294909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2749 109 426 Nodulin-like Gene Family AT2G39510 57.862 4.67e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g2749 EamA 1.1e-10 CL0184