Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2723 ATGAACACCAACACATCGCAGGCGCATGGCTCTAAGCCGTCGTTTAGCGGATACGCCTATTACTCCATCGGACTATCCACCGGAATTCTCCTTCTCTTCGCTTTCATCACCGTAATCTTGTACTTGTGCTCTCGCAGAATCGCCATGAATCCGACGCAACTGTCACGAGTTCGCAACGTAAGCTTTGGTTTACACACCATTAGCATCGGAGATGCTCCGGGGACGAACAGTCCACAGTTAGGTGTGGATGAAGCGACTTTGAAGAGTTATCCGGTGCTGCTATACTCAGAAGTGAATCGTGATCGGAAAGGCGGTGGTGGTGATTCTGCGGAGGCTACTTGTTCGATATGCTTGGGGGATTTCAGTGACAGTGAGTGGTTGAGGGAGTTGCCGGATTGTGGTCACTTGTTTCACCAGAAGTGTATTGATATGTGGCTGAGGATGAACTCTTCATGTCCGTTGTGCCGGACCTCGCCGCTTCCGACGCCGGTTTCAACTCCACTCGCTGAAGTTACTCCCTTGGCAAGATCTGGGGCTTGA 540 0.513 MNTNTSQAHGSKPSFSGYAYYSIGLSTGILLLFAFITVILYLCSRRIAMNPTQLSRVRNVSFGLHTISIGDAPGTNSPQLGVDEATLKSYPVLLYSEVNRDRKGGGGDSAEATCSICLGDFSDSEWLRELPDCGHLFHQKCIDMWLRMNSSCPLCRTSPLPTPVSTPLAEVTPLARSGA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2723 179 Pfam Ring finger domain 113 156 IPR001841 -
Lele06g2723 179 SUPERFAMILY RING/U-box 113 162 - -
Lele06g2723 179 CDD RING-H2_PA-TM-RING 113 156 - -
Lele06g2723 179 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 170 IPR045899 -
Lele06g2723 179 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele06g2723 179 SMART ring_2 114 155 IPR001841 -
Lele06g2723 179 FunFam E3 ubiquitin-protein ligase ATL6 72 161 - -
Lele06g2723 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2723 Lele-ChrLele06 35058601 35059140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2723 21 179 C3H Transcription Factor Family AT2G35910 48.125 1.15e-38 130