Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2702 ATGGGCTCTGAAGCGATCCTTCTCCCAAAATGGGCATCACAGCCTTGCATCATGGGAATCGACGAAGCTGGCCGAGGACCCGTTTTAGGACCCATGGTGTATGGATGCTTGTACTGTGCTCGCTCCTATCAGAATACCCTCGCAACTTTGAGTTTTGCTGATTCAAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGATAATCTAAAGGGAAATGAATCAATTGGATGGGCAGTTGATGTCTTAGACCCTAGGGAACTCTCAGCTAAAATGTTGAAGAGGAACAAGATAAACCTGAATGAGATATCACATCAATCTGCAATGGGCTTGATTGATAGGGTACTGAAGATGGGAGTTCTTCTGACTGAGGTCTATGTAGATACTGTGGGTGATCCAGGAAAATATGAAATTATGCTATCAAAAAATTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTGAGTGGTGCTAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTTTGCGGGAATGGGTGCTTGATGAGACTGCTGCAAACATGCACAGAAACTTTGGTTCTGGATATCCTGGAGACCCCCAAACCAAATCCTGGTTGGAACAGCACAAACATTCTGTCTTTGGATTCCCAACATTGGTCAGATTCAGCTGGGGAACCTGCACTACATATTTTAAAGATATTGTGGAAGTCTTATGGGAATCTGATAAAGTGGATGAAGAAGGGGAAGGTGGAAGCAACAGTGGGAAGCGGCAATTGAAATTAAGAAACGTAGGTTTCAGCACACCAAAGAGAAAAAGTGAAGAAATAGAATCAAGTGGCAAAGGTCGCAGCAGGTTTTTCCAGGCTCGGAAGCTTGAAATTGTTACTGATTTCTGA 900 0.43 MGSEAILLPKWASQPCIMGIDEAGRGPVLGPMVYGCLYCARSYQNTLATLSFADSKTLKEEKREELFDNLKGNESIGWAVDVLDPRELSAKMLKRNKINLNEISHQSAMGLIDRVLKMGVLLTEVYVDTVGDPGKYEIMLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAANMHRNFGSGYPGDPQTKSWLEQHKHSVFGFPTLVRFSWGTCTTYFKDIVEVLWESDKVDEEGEGGSNSGKRQLKLRNVGFSTPKRKSEEIESSGKGRSRFFQARKLEIVTDF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2702 299 TIGRFAM TIGR00729: ribonuclease HII 17 230 IPR004649 GO:0004523|GO:0016070
Lele06g2702 299 CDD RNase_HII_eukaryota_like 18 234 - -
Lele06g2702 299 FunFam Ribonuclease 3 187 - -
Lele06g2702 299 Gene3D Ribonuclease hii. Domain 2 188 234 IPR023160 GO:0004523
Lele06g2702 299 SUPERFAMILY Ribonuclease H-like 16 233 IPR012337 -
Lele06g2702 299 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 286 IPR001352 GO:0003723|GO:0004523
Lele06g2702 299 Pfam Ribonuclease HII 18 228 IPR024567 GO:0004523
Lele06g2702 299 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 15 237 IPR024567 GO:0004523
Lele06g2702 299 MobiDBLite consensus disorder prediction 246 283 - -
Lele06g2702 299 MobiDBLite consensus disorder prediction 268 283 - -
Lele06g2702 299 Gene3D - 4 187 IPR036397 GO:0003676
Lele06g2702 299 FunFam Ribonuclease 189 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2702 Lele-ChrLele06 34826270 34829436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2702 1 299 Core DNA Replication Machinery Family AT2G25100 67.224 2.09e-147 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2702 06 34826270 34829436 Lele07g2736 07 32857484 32860901 hybridization
Lele06g2702 06 34826270 34829436 Lele08g2645 08 32106110 32108877 hybridization