LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g2700	ATGGTGTGTGGACTATTATGTTATAACAAGACATTGATGTTATAGTACAAGATGTCAGTTGTGAACGTGTCCAATGTGAGACTTCCTGCAGCTTCCTTGTCCAGAACGACACCAGCAAGGAGACCTTGTTCTCTATTTAAGAGTGGGTCATCCTTAAGCTCTGTGAAGAATGCTTCTAACCTATTTGGGCTGAAATCTGAATCCTTCAGAGTTTCTGCCATGGCTGTGTATAAAGTGAAACTGATTGGACCTGATGGCACTGAGAATGAGTTTGAAGCTCCTGATGACTCTTACATTCTGGACTCAGCTGAAAATGCAGGTTTGGAGCTACCTTACTCTTGCAGAGCTGGCGCCTGCTCTACTTGTGCCGGCCAAGTGGTTACAGGATCCGTGGACCAATCAGATCAATCCTTTCTGGATGAGAAGCAGATGGAGCAGGGTTATATTCTGACCTGTGTTTCATATCCCACCTCTGATTGTGTGATTCACACCCACAAGGAGAGTTCTGTTTCGGCCATGGACACTTCAAATCCTGCAGCATTTGTAAATGCAGAGTTGCTTCCCAATTTCATAGGGAAGAAAGTTCGAGCCGTTGTTCAAGTTCATCAATCTGACGGTGGTGTTGCCATTGGAAATTCCACAGATGGCAATCAGCTAACTGTGAAAGGGTTGCCACTGGTTCCTGCTATGAATTATGTTGAGGTGATTGGTATTGCAGAGAGTAACCAATTGATTAATGCTGAGATATGGACTGACTTTGGCAACACATTCGGTATGAAGCACTACAAAGCATATTGA	798	0.4411	MVCGLLCYNKTLMLXYKMSVVNVSNVRLPAASLSRTTPARRPCSLFKSGSSLSSVKNASNLFGLKSESFRVSAMAVYKVKLIGPDGTENEFEAPDDSYILDSAENAGLELPYSCRAGACSTCAGQVVTGSVDQSDQSFLDEKQMEQGYILTCVSYPTSDCVIHTHKESSVSAMDTSNPAAFVNAELLPNFIGKKVRAVVQVHQSDGGVAIGNSTDGNQLTVKGLPLVPAMNYVEVIGIAESNQLINAEIWTDFGNTFGMKHYKAY	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g2700	265	Gene3D	-	74	175	IPR012675	-
	Lele06g2700	265	ProSiteProfiles	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	77	168	IPR001041	GO:0051536
	Lele06g2700	265	Pfam	Replication factor A protein 3	173	264	IPR013970	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Lele06g2700	265	Gene3D	-	176	265	IPR012340	-
	Lele06g2700	265	PANTHER	FERREDOXIN	40	169	-	-
	Lele06g2700	265	SUPERFAMILY	Nucleic acid-binding proteins	177	262	IPR012340	-
	Lele06g2700	265	CDD	RPA3	178	265	-	-
	Lele06g2700	265	FunFam	Ferredoxin	75	171	-	-
	Lele06g2700	265	SUPERFAMILY	2Fe-2S ferredoxin-like	66	170	IPR036010	GO:0051536
	Lele06g2700	265	TIGRFAM	fdx_plant: ferredoxin [2Fe-2S]	75	169	IPR010241	GO:0009055\|GO:0022900\|GO:0051537
	Lele06g2700	265	Pfam	2Fe-2S iron-sulfur cluster binding domain	84	157	IPR001041	GO:0051536
	Lele06g2700	265	ProSitePatterns	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	114	122	IPR006058	GO:0051537
	Lele06g2700	265	CDD	fer2	79	163	IPR001041	GO:0051536

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g2700	Lele-ChrLele06	34814856	34819282	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g2700	173	262	Core DNA Replication Machinery Family	AT4G18590	57.778	1.06e-31	111

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g2700	06	34814856	34819282	Lele07g2734	07	32841899	32852073	hybridization
	Lele06g2700	06	34814856	34819282	Lele08g2643	08	32097126	32098193	hybridization