Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2684 ATGGATGTTCTATCGATTTCGCGTACGTTAAGTGAACCTATAGCCTTTTCCATTATCAAACCTCATAGAATCCAACTTCGCCATCTTCCCTTAAACCCCGGATTGCGCAATTCATCAAATAACACAACCCATTTCAAGCTTTCTTCTTCTTCTTCTTCGACTTCATCTTCCTCTTTCTGTAAGTGTTTCTGTTCTAGAATAGCGGCAACTTCAGCAACTAATTACACTCCCTTAGGTTCTTCCATCACTGAGAACCGCCATTGGCTTGTAATCATGGAAAAGCCTCCACAAGGGGTTGATTCCAAGCAGCAAGTCATTGATTATTATGTTCAAACTCTGCAAATTGTTATGGGCAGTGAGAAAGAGGCTCAAATGTGTATTTACGACGCTTCGTGGTATACCCACTACGATTTTTGTTGTGACATCGATGAAGAAACTTCTTCCCAGCTCGCTAGTTTACCTGGGGTCATTTCAGTTAAGCCTGACCCTAATTTCAGTTCTCCAGAAAAGGATAATAGGTCATCAAATGGGCAGAAAGATAATTTGTCAAAGCTACAAACTGGAGCCACTTTGTTGTTCCCTGCTGGGAATTCAAAACATTGGCTTGTTCGAATGGATAAACCTGGGGTTGGGGTTGTTACAAAGGCCCAAGTCGTGGATTTTTATGCTCAAATCCTAACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAGCTTGATGAGGATTGTGCACGAGAACTAGCTGGCGTCCCTGGTGTCTTATCAGTTCAGCCAGATAACAATTTTGAGTCAGAAATTAAAGATTATGCAGGTGTAAGCTTAGGAAACAGTTTGAATGTGCTGAACTCTTCTGAAGCAAGTGAGACAACTCCTTTGAAAACAAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCAGCATTGAAAGATATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTGGATGCTGCCAAGCCGAGCCCTCCCAAATATAATAGGGGTCGTGCGAGACCTGTAGCCTGA 1212 0.4134 MDVLSISRTLSEPIAFSIIKPHRIQLRHLPLNPGLRNSSNNTTHFKLSSSSSSTSSSSFCKCFCSRIAATSATNYTPLGSSITENRHWLVIMEKPPQGVDSKQQVIDYYVQTLQIVMGSEKEAQMCIYDASWYTHYDFCCDIDEETSSQLASLPGVISVKPDPNFSSPEKDNRSSNGQKDNLSKLQTGATLLFPAGNSKHWLVRMDKPGVGVVTKAQVVDFYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCARELAGVPGVLSVQPDNNFESEIKDYAGVSLGNSLNVLNSSEASETTPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKDMNGKIINGWMIVVDAAKPSPPKYNRGRARPVA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2684 403 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 70 166 IPR037045 -
Lele06g2684 403 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 194 279 IPR037045 -
Lele06g2684 403 FunFam Organelle RRM domain-containing protein 1, chloroplastic 189 278 - -
Lele06g2684 403 Gene3D - 294 402 IPR012677 -
Lele06g2684 403 MobiDBLite consensus disorder prediction 159 181 - -
Lele06g2684 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 379 IPR000504 GO:0003723
Lele06g2684 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Lele06g2684 403 SUPERFAMILY RNA-binding domain, RBD 301 399 IPR035979 GO:0003676
Lele06g2684 403 SMART rrm1_1 312 385 IPR000504 GO:0003723
Lele06g2684 403 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 189 380 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2684 Lele-ChrLele06 34703018 34706406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2684 308 402 C2H2 Transcription Factor Family AT2G19380 35.052 9.53e-12 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2684 06 34703018 34706406 Lele07g2720 07 32704675 32707698 hybridization
Lele06g2684 06 34703018 34706406 Lele08g2625 08 31979394 31984708 hybridization