Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2656 ATGGCCGCTCCGAAGCCACGCAACACTCGATCAACGTCTCTTAGGGACGCCTCTGACTCCTCCAAGATGGAGGGCACGGGTACCTGGGATGTCCTCCAATGGACCAAGTTTCAGCCTGGTTCACGCTACGTTTCGCATGCCAATTTGGATTTCTTGCTGGAGGAAGAAAACGTCATAGCCCAGGGACATGGTGTTGTTCTTATTAATTCAGATGATGCAGGCACATTGATGGTCACAAATTTTCGTCTTATTTTTCTGAGTGATCGAACTAGAAATATTATTGCCCTTGGAACAATTCCTCTTGCAACGATTGAGAAGTTTAACAAGATAGCTGTAAAGATGCAGTCAGCTAACCGTCAACCAGACAAGACACCCCCACAAAGACTGCTCCAGGTTATTGGAAAAGATATGAGAATTATCGTTTTTGGTTTCAGGCCTCGTACCAAACAGAGACGTGTCATATTTGATGCCTTACTAAGAAGTACAAAGCCAGCTGTACTATGGGATCTTTATGCATTTGTATGTGGACCTTCTAGATTTACTAACTCTAACCCTAAGGTGCGCCTACTAGATGAGTATTTCCGACTTCTTGGAAAACGCTTTTACCGTGCTTCAATCAATATGATTGAAAGTGGGTCCTTTACCTTGTCGAATGACTTGTGGAGAATAAGCAAAGTGAACTCTAACTACAACATGTGCCAGAGTTATCCTTTCTCTTTGATTGTACCAAAGACCATAAGTGATGATGAAGTGCAACAAGCTTCCACCTTTCGTGGTAGATGTCGGGTTCCTGTAGTTTCATGGTGCCACCCAGATACGGGAGCAGTTCTTGCACGTTCATCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAATGCAGATGAAAAGATCGTGGCTGGAATATGTGGCAAGCTTAGTGATGGCTCACGCAGGAAGCTTTATATTGCTGATGCAAGACCGAGGAAGAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCAGAATCATCTTCAAATTACTTTCAGTGTGAGGTAGTTTTTTTTGGCATAGACAACATCCATGCAATGAGAGAAAGCTTTGCTCGGTTGAGAGAATACCTAGACACCCATGGCAAAGCATCATCAGATGGAATATCATCTTTTTTGAGACATGGTGGGTCAACATGGGGTGGAGGCAATCTAAGTAGTATGTCTACTTCAGTATCTACTCTTGGGGACAGTGGATGGCTACTACACGTTCAAAGTGTCTTAGCCGGTGCTGCTTGGATTGCTGCTCGCCTTGATATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGATGGCTGGGATAGAACAAGTCAGCTGGTTTCTCTTGCTAATTTGTTACTTGATCCATACTATCGCACATTCCAAGGGTTTCAGGCACTTGTGGAAAAAGACTGGCTAGCATTTGGTCACCCATTTTCAGATCGGATGGAAATGCCCTCAGTCTCTGGAAGTGGCAACATGCCTTTTGAGTTGACTAGACAGTCTTCTACTGGAAGTTGCCCTTCACCACCCATGCGCCAGTCATCATTCACATCTCAGTCATCCCCTTCTCATGCACAGACCTCAAACCACTACTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCGCAACTGCTGCGGATGTATCCTTTTGCTTTTGAGTTCTCCTCGGTATTTCTGGTGGATTTCCTAGACTGTGTTCTTTCTTGTCGATTTGGAAACTTCTTATGTAATAGTGAGAAGGAAAGGCAGCAATGCAATGTTTTTGAAGCTTGTGGATGTTTGTGGGCATACTTGGCTGACTTGCGTGCCTCTGAAGGAAAATCTCATGTGCATTGTAATCTCTATTATGATCCATTGAAGTACAATGGTCCTATCTTTCCCCCAGCAGCAGCTTTAGCCCCAACACTCTGGCCCCAATTTCTTCTTCGCTGGGCTTGTCCAGAAGAAGCGCAAGCTGCTGTTGAAATTGAAGCAGAATGTAGACAAATGTTTCTGAAATACTCTGAGATGCAGAAGGCTAAAGAATTAGCAGAGAGGAAAGCCAAAGAAATGGAAATTGCCATGGAATCATTGAGTTCAGAACTACGAAATGAGAAACAGTTAAGATGGTCAGCTACGAACACGACCAAGAAAACAAGCAAAGAGAATGTGGCCATAAAACGAGCAATTCAGTCACTGGGGTGCAAGTTTCACTTATCTGACAATGGAGATTGTGTTTTCTATATTGAAAGCAACTTAGTGGGCTCAGCACAATCCACTATGTACCCTTCCACCAGAAAGGATTCGGATAGTACATCATATGATGACAAGAAGGATCTGTCTGTTTCAGTCTCAGTTACGGAGGATGATGATCATGACGATCATGCAAGCAATGCAATTGTTAAAGTATGTGAAGCTCTATGCCCCCTTCGTAGTCCAGGTGGATGCTGCAGGTGGCCAAATGCCGGTTGTGTGCGACTAAGTAGTCAGTTTGTTGGTTTAAGGGCAAATTTTGATGCATTTGACCAACTGTCGATTGACGATAGTTATTTTAAATCTGAATAG 2562 0.4375 MAAPKPRNTRSTSLRDASDSSKMEGTGTWDVLQWTKFQPGSRYVSHANLDFLLEEENVIAQGHGVVLINSDDAGTLMVTNFRLIFLSDRTRNIIALGTIPLATIEKFNKIAVKMQSANRQPDKTPPQRLLQVIGKDMRIIVFGFRPRTKQRRVIFDALLRSTKPAVLWDLYAFVCGPSRFTNSNPKVRLLDEYFRLLGKRFYRASINMIESGSFTLSNDLWRISKVNSNYNMCQSYPFSLIVPKTISDDEVQQASTFRGRCRVPVVSWCHPDTGAVLARSSQPLVGLMMNMRSNADEKIVAGICGKLSDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQCEVVFFGIDNIHAMRESFARLREYLDTHGKASSDGISSFLRHGGSTWGGGNLSSMSTSVSTLGDSGWLLHVQSVLAGAAWIAARLDMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFQGFQALVEKDWLAFGHPFSDRMEMPSVSGSGNMPFELTRQSSTGSCPSPPMRQSSFTSQSSPSHAQTSNHYSPIFLQWVDCVSQLLRMYPFAFEFSSVFLVDFLDCVLSCRFGNFLCNSEKERQQCNVFEACGCLWAYLADLRASEGKSHVHCNLYYDPLKYNGPIFPPAAALAPTLWPQFLLRWACPEEAQAAVEIEAECRQMFLKYSEMQKAKELAERKAKEMEIAMESLSSELRNEKQLRWSATNTTKKTSKENVAIKRAIQSLGCKFHLSDNGDCVFYIESNLVGSAQSTMYPSTRKDSDSTSYDDKKDLSVSVSVTEDDDHDDHASNAIVKVCEALCPLRSPGGCCRWPNAGCVRLSSQFVGLRANFDAFDQLSIDDSYFKSE 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2656 853 MobiDBLite consensus disorder prediction 504 531 - -
Lele06g2656 853 Coils Coil 673 707 - -
Lele06g2656 853 Pfam Myotubularin-like phosphatase domain 186 589 IPR010569 -
Lele06g2656 853 SMART gram2001c 41 111 IPR004182 -
Lele06g2656 853 SUPERFAMILY PH domain-like 52 175 - -
Lele06g2656 853 MobiDBLite consensus disorder prediction 1 25 - -
Lele06g2656 853 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Lele06g2656 853 ProSiteProfiles Myotubularin phosphatase domain. 198 647 IPR010569 -
Lele06g2656 853 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 213 651 IPR029021 -
Lele06g2656 853 Gene3D - 63 162 IPR011993 -
Lele06g2656 853 PANTHER MYOTUBULARIN-RELATED 43 778 IPR030564 -
Lele06g2656 853 Coils Coil 851 853 - -
Lele06g2656 853 CDD PTP-MTM-like 261 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2656 Lele-ChrLele06 34439184 34450695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2656 1 851 Protein tyrosine phosphatase (PTP) family AT3G10550 65.105 0.0 1151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2656 06 34439184 34450695 Lele07g2692 07 32443429 32461019 hybridization
Lele06g2656 06 34439184 34450695 Lele08g2595 08 31702691 31718233 hybridization