Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2591 ATGTTCATTTTAAGCACATATCCAATTCCATTACTGAACCAGAAACAATCAAAAAAACAAGTTGCAGCTCTCTATCTCTGGTCTCAAACTCTTGAGATTCCTATTCTCGACGAATCATCGTTGGCAATAAAGAAGCCTGTAGGGATATTACATGTGAATGTGATTAGGGCACTAAAGCTTTTGAAGATGGATTTGTTGGGAAGTTCTGATCCATATGTCAAACTCAGCCTATCTGGGGACAAGCTCCCATCGAAGAAAACCACCATCAAGAGGAGGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTGAAGGACCCTGATTCTCAAGTTCTCCAATTGCAAGTCTTTGACTGTGATAAGGTTGGGGGACATGACAGACTTGGGATGCAGTTAATCCCACTTAGGCTGCTGAAGCCTTATGAGAGCAAGGAATTTACACTTGATTTACTCAAGGACACAAATGTCACAGAGCCTCCAAATAAGAAGCCAAGAGGTCAAATTGTGGTGGATCTTACTTCTGTTCCATTCAGAGAAGAAAGTGGCAAATTTGGTGGGTATCTGGAAAATGGGAATGGTAAAGTATCTGATGATGACGATATCCAAGGGGCTGGTTTGCTCTCCGTTCTAATACAGCAGGCTGAGGAGGTTGAGGGTAAAAGCCACAACAATCCATACGCTCTGGTTTTCTTCAGAGGCGAAAGGAAGAAGACAAAGATGATAAGGAAAACTCGTGACCTCAGGTGGAACGAAGAATTTGAATTTATGCTAGAGGAGTCTCCTCTAAATGAGAAGATACAAATTGAGTAG 816 0.4179 MFILSTYPIPLLNQKQSKKQVAALYLWSQTLEIPILDESSLAIKKPVGILHVNVIRALKLLKMDLLGSSDPYVKLSLSGDKLPSKKTTIKRRNLNPEWNEKFKLVVKDPDSQVLQLQVFDCDKVGGHDRLGMQLIPLRLLKPYESKEFTLDLLKDTNVTEPPNKKPRGQIVVDLTSVPFREESGKFGGYLENGNGKVSDDDDIQGAGLLSVLIQQAEEVEGKSHNNPYALVFFRGERKKTKMIRKTRDLRWNEEFEFMLEESPLNEKIQIE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2591 271 Gene3D C2 domain 208 271 IPR035892 -
Lele06g2591 271 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 179 IPR035892 -
Lele06g2591 271 SMART C2_3c 49 149 IPR000008 -
Lele06g2591 271 SMART C2_3c 208 271 IPR000008 -
Lele06g2591 271 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 15 271 IPR045050 GO:0008289
Lele06g2591 271 CDD C2 209 271 - -
Lele06g2591 271 ProSiteProfiles C2 domain profile. 27 150 IPR000008 -
Lele06g2591 271 CDD C2 50 152 - -
Lele06g2591 271 PRINTS C2 domain signature 114 122 IPR000008 -
Lele06g2591 271 PRINTS C2 domain signature 65 77 IPR000008 -
Lele06g2591 271 PRINTS C2 domain signature 92 105 IPR000008 -
Lele06g2591 271 FunFam Synaptotagmin-2 isoform A 43 197 - -
Lele06g2591 271 ProSiteProfiles C2 domain profile. 189 271 IPR000008 -
Lele06g2591 271 Pfam C2 domain 48 146 IPR000008 -
Lele06g2591 271 Pfam C2 domain 208 270 IPR000008 -
Lele06g2591 271 Gene3D C2 domain 43 187 IPR035892 -
Lele06g2591 271 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 207 269 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2591 Lele-ChrLele06 33748959 33753461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2591 47 131 C2H2 Transcription Factor Family AT4G05330 38.824 1.78e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2591 06 33748959 33753461 Lele07g2627 07 31752299 31756840 hybridization
Lele06g2591 06 33748959 33753461 Lele08g2529 08 31015216 31019803 hybridization