Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2514 ATGCAGGCGAAAGTTTCCTCTAATCCACCATCTTTTCCAGATTTCAATTTGCAGCCTAGTAGTCAACAGAGGTGGGAAGATCCCTCTATGTCAGATTTCGGTATAAGGATGGAAGCCCTGTTTAAAGAATTCAGCCAAGCTTGTGGAGCCCAGTCCTTGCTTCCGGGTGGTTCCAACAAGATCAAGATGCCGAATCGAGGAAATTGTCAGATGGACGATGCATCACGAACCTGTAAACTCCGAGATTGGGATCCCACCATAATGTTGGAAAATCTTTCTTTCCTGGAGGATAAGATTCATCATCTCCAGGGTCTAGTTCATTTGATTGTTGATCAGAAAGGTCAACAATTCGGACGACCCCCCGATGAAATTATAACTCAAGAGAAGCAGCTTGTCACGGCCGATCTGACATCGATTATCGTTCAATTGATCTCTACAGCAGGAAGTCTTCTTCCTTCTGTCAGGCTTACTACTTCAAACACCGTTCCATCCATCAGACAACATGGCCAGATTCCTGGGATTACTTTTCCTTCTGGCTTAAATCTGAGTAGTAATATCCAACCACAACGTGATATCAGAGATAAAATACCTAATCAATCCAACCCGATTGATCTTACTAATAATATGTGTGAAATGGAGCAAAACCAAATGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGACGAGGGCGAGAACCTTCCCCCGGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTCTGTACAATATGTGGGAAGGGTTTCAAGAGAGATGCGAATCTTCGGATGCATATGAGAGGGCATGGCGACGAGTACAAAACCCCGGAAGCGCTTGCAAAACCTAACAAAGAATCCGTGTCAGAACCGAAGCTCATCAAGAGATATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCTTATGTGTGAAAAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACATTTGCAACAGGTGTCACACGAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCGATACCCTCGGATGAATCGAAAGCACCAGCCGGGCTAACTGATATGGAAATCAGGGAGAACAATAATAATAATAATAATAATAAGGGAGGAATCATTAACTTGAGCTTTGGATCAAATGCTTCTTGGTGTGAAAATGGAATTCAAAACATTATGGATATGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATGGAACTTTGAAACCTGTAACTTCGGTGAATTCAATGATTTTCCTCGACCCCCATTTGAAGACGTCGCCGAAGGTTCGTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCTAAATCTGGGTAA 1518 0.4216 MQAKVSSNPPSFPDFNLQPSSQQRWEDPSMSDFGIRMEALFKEFSQACGAQSLLPGGSNKIKMPNRGNCQMDDASRTCKLRDWDPTIMLENLSFLEDKIHHLQGLVHLIVDQKGQQFGRPPDEIITQEKQLVTADLTSIIVQLISTAGSLLPSVRLTTSNTVPSIRQHGQIPGITFPSGLNLSSNIQPQRDIRDKIPNQSNPIDLTNNMCEMEQNQMEEHESKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICNRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDESKAPAGLTDMEIRENNNNNNNNKGGIINLSFGSNASWCENGIQNIMDMKGITDDPISYLSSWNFETCNFGEFNDFPRPPFEDVAEGSFPFLMSESFNYSPKSG 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2514 505 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Lele06g2514 505 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 75 429 IPR044300 GO:0010044|GO:0010447
Lele06g2514 505 SMART c2h2final6 342 364 IPR013087 -
Lele06g2514 505 SMART c2h2final6 304 337 IPR013087 -
Lele06g2514 505 SMART c2h2final6 255 277 IPR013087 -
Lele06g2514 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 282 IPR013087 -
Lele06g2514 505 MobiDBLite consensus disorder prediction 1 28 - -
Lele06g2514 505 Gene3D Classic Zinc Finger 238 308 - -
Lele06g2514 505 SUPERFAMILY beta-beta-alpha zinc fingers 254 279 IPR036236 -
Lele06g2514 505 Coils Coil 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2514 Lele-ChrLele06 32935415 32936932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2514 223 503 C2H2 Transcription Factor Family AT1G34370 68.881 2.14e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g2514 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2514 06 32935415 32936932 Lele06g2514 06 32935415 32936932 ECH
Lele06g2514 06 32935415 32936932 Lele07g2548 07 30878112 30879662 hybridization
Lele06g2514 06 32935415 32936932 Lele08g2450 08 30232386 30233912 hybridization