Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2507 ATGGCTGCTTCTTCATCCGGAAATTCGATTTCTACTACTTCTTCATCTACATTCTCTCACAAACCGTTGGAATTCTCCCCTGATTCCCCCCAGAGAATCTCCCTTAGCCCTGATCAGGTCAAGTACTGCTCCGAAGCTCTAACCATCCTCAGGGAGAAGCTTCAGACGCCGTACAGGATCGGTCAAGAGTTTGCTCACTTGCAGGCCAATAGGATAGCACCCAGTGAGATGAGGAGAAGATGCACTGTAGGTCTAAATGACGTAAATGTGAGCAAAAATCGGTATACAGATGTCCTACCATTTGACAAGAACAGAATTGTTCTTGAATCAAGTTCAGATTATAGAACTGAAGCCAAGGGATATATAAATGCAAGCTTCATCTCGACCTCTTCCTCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGTCCACTACCACATACTTATGAGGATTTCTGGGAAATGGTGGTCCAATACCGTTGCCCTGCTGTTGTGATGCTCACTAGGCTTGTTGACAATTATAAGATGGTAAAATGTGGAGATTATTTTCAAGCTGAAGATGGATCTAGAGAGTTAGGTAATATCTCTATTATCAGCAAATGGATGAAAACTACTGAAACATCACTGGTACTGCGCCATTTGGAGGTGAAGCATATAGAGGAAGAAGAGCCACCCTTGTCTGTTTTGCATATTCAGTATCCTGAATGGCCTGATCATGGAGTTCCCAAAGATACGTATGCTGTGCGTGAAATTTTGAAAAGATTGTACCATGTGCCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGGACTGGAACATACTGTGCAATTCACAACACAATTCAGAGAATCCTTGCTGGTGATATGTCTGCCTTGGATCTTGGTAATACCATAGTTGTCTTCAGGTCACAGCGTATTGGAATGGTCCAGACACAGAAGAGCTGGACCAGTACTTTTTCTGCTATAAAGCTATCGTAG 993 0.435 MAASSSGNSISTTSSSTFSHKPLEFSPDSPQRISLSPDQVKYCSEALTILREKLQTPYRIGQEFAHLQANRIAPSEMRRRCTVGLNDVNVSKNRYTDVLPFDKNRIVLESSSDYRTEAKGYINASFISTSSSGSVSQFIATQGPLPHTYEDFWEMVVQYRCPAVVMLTRLVDNYKMVKCGDYFQAEDGSRELGNISIISKWMKTTETSLVLRHLEVKHIEEEEPPLSVLHIQYPEWPDHGVPKDTYAVREILKRLYHVPPNLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLGNTIVVFRSQRIGMVQTQKSWTSTFSAIKLS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2507 330 Pfam Protein-tyrosine phosphatase 89 323 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 264 282 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 297 312 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 120 127 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 138 158 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 226 243 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 PRINTS Protein tyrosine phosphatase signature 313 323 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 317 IPR029021 -
Lele06g2507 330 SMART ptp_7 227 329 IPR003595 -
Lele06g2507 330 CDD PTPc_plant_PTP1 121 317 - -
Lele06g2507 330 Gene3D Protein tyrosine phosphatase superfamily 38 328 IPR029021 -
Lele06g2507 330 FunFam Tyrosine-protein phosphatase non-receptor type 12 37 329 - -
Lele06g2507 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 321 IPR000387 GO:0016311|GO:0016791
Lele06g2507 330 MobiDBLite consensus disorder prediction 1 32 - -
Lele06g2507 330 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 39 320 - -
Lele06g2507 330 ProSiteProfiles PTP type protein phosphatase domain profile. 60 327 IPR000242 GO:0004725|GO:0006470
Lele06g2507 330 ProSitePatterns Tyrosine specific protein phosphatases active site. 267 277 IPR016130 GO:0016311|GO:0016791
Lele06g2507 330 SMART PTPc_3 59 328 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2507 Lele-ChrLele06 32847239 32852027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2507 38 327 Protein tyrosine phosphatase (PTP) family AT1G71860 69.310 2.31e-154 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2507 06 32847239 32852027 Lele06g2507 06 32847239 32852027 ECH
Lele06g2507 06 32847239 32852027 Lele07g2539 07 30772461 30783105 hybridization
Lele06g2507 06 32847239 32852027 Lele08g2444 08 30135962 30140753 hybridization